Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13m05f
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555... 30 1.3
09_01_0035 + 570455-570536,570617-570725,570759-571164 29 3.0
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545... 29 4.0
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 28 7.0
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 27 9.2
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 27 9.2
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310... 27 9.2
>02_05_1080 -
33955034-33955117,33955199-33955300,33955381-33955510,
33955674-33955783,33955827-33955950,33956042-33956136,
33956205-33956300,33956419-33956551,33956668-33956759,
33956844-33956948,33957201-33957335,33957421-33957526,
33957621-33957748,33957860-33957958,33958049-33958228,
33958303-33958446,33958533-33958647,33958739-33958905
Length = 714
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 435 EPGNYKRTTKRVDDGHRLCSELQTLVQERADIEKAYAKSLRGWAKKWNDLIEK 593
E +K +R D ++CS + + +D++KA A L G +KK+ +EK
Sbjct: 313 EEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIACLLFGGSKKFLKFVEK 365
>09_01_0035 + 570455-570536,570617-570725,570759-571164
Length = 198
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 417 TSDSFWEPGNYKRTTKRVDDGHRLCSELQTLVQERADIEKAYAKSLRGWAKKWNDLIEKG 596
TSDS PG+ K + D+ S+ + ER +E+ + + + G ++ N E+G
Sbjct: 116 TSDSSAAPGSAKSSAAAEDEEDWKESDAASCASERRRVERMWRRGVDGERRRRNGAEEEG 175
Query: 597 PEYG 608
G
Sbjct: 176 EGLG 179
>12_02_0715 - 22453747-22453935,22454347-22454457,22454514-22454572,
22454893-22455067,22455255-22455307,22455670-22455739,
22457044-22457218,22457639-22457703,22458196-22460826
Length = 1175
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 432 RTSRKWL*ATHARRCGATWRCDTHT 358
R SR+++ HA RC ATWR +T T
Sbjct: 976 RNSREYV-GCHAIRCWATWRKETRT 999
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 614 HCAVFWSLFDQIIPFLSPSSEAFRVRFLDIGTLLDQGL 501
+C FW + ++ F+S + +F + +DI LD G+
Sbjct: 616 YCGPFWKKMEPMLTFISSENLSFLKKQIDIVEELDLGM 653
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 452 EDHQESRRWTSTVQRTSNPGPRACRY 529
ED+ +++W S ++RT N P A Y
Sbjct: 157 EDNVPAKKWVSLIRRTLNRNPGASSY 182
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = -1
Query: 455 PLVVTRLPERVGSGCEQRMLVA--VVRHGGATLTH 357
PL R+P+R G G E+R + A ++++GG LTH
Sbjct: 509 PLKWIRVPKRCGDGEEERPIEALMILKYGG-VLTH 542
>01_01_0412 -
3099509-3099634,3099758-3099904,3099991-3100089,
3100171-3100602,3101121-3101599,3101683-3101728
Length = 442
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 385 TTATSMRCSQPLPTRS 432
TT+T MR SQPLP R+
Sbjct: 266 TTSTPMRASQPLPVRA 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,339,325
Number of Sequences: 37544
Number of extensions: 360275
Number of successful extensions: 905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -