Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13m05f
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28732-6|AAB04903.2|  489|Caenorhabditis elegans Hypothetical pr...    53   1e-07
U28732-5|AAT92075.1|  495|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   6.3  

>U28732-6|AAB04903.2|  489|Caenorhabditis elegans Hypothetical
           protein F45E1.7a protein.
          Length = 489

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/66 (34%), Positives = 36/66 (54%)
 Frame = +3

Query: 429 FWEPGNYKRTTKRVDDGHRLCSELQTLVQERADIEKAYAKSLRGWAKKWNDLIEKGPEYG 608
           FWE G+YK   KR  DG     +   + +ERA+IE  Y+K L   A+KW   +++    G
Sbjct: 10  FWEVGSYKHNVKRFKDGVEQLDDYCKMSRERAEIEAKYSKMLSQHAEKWRAHVDRTVSAG 69

Query: 609 TMEAAW 626
           +++  W
Sbjct: 70  SVKTVW 75


>U28732-5|AAT92075.1|  495|Caenorhabditis elegans Hypothetical
           protein F45E1.7b protein.
          Length = 495

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/66 (34%), Positives = 36/66 (54%)
 Frame = +3

Query: 429 FWEPGNYKRTTKRVDDGHRLCSELQTLVQERADIEKAYAKSLRGWAKKWNDLIEKGPEYG 608
           FWE G+YK   KR  DG     +   + +ERA+IE  Y+K L   A+KW   +++    G
Sbjct: 16  FWEVGSYKHNVKRFKDGVEQLDDYCKMSRERAEIEAKYSKMLSQHAEKWRAHVDRTVSAG 75

Query: 609 TMEAAW 626
           +++  W
Sbjct: 76  SVKTVW 81


>Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical
           protein C36E8.4 protein.
          Length = 548

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 411 TTTSDSFWEPGNYKRTTKRVDDGHRLCSELQTLVQERADIEKAYAKSLR 557
           TT  D F  P N+++    + + + L +E+ T  +E+A ++  Y+K+L+
Sbjct: 41  TTLVDKFATPSNFRQLRDLIRNNNELLAEVVTAFEEKAALDFHYSKTLK 89


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 433  QNESEVVVSNACSSLWC--DMAVRHSHTAPN*ANRTVWRCLYSFENQRLIDALSSFSRSI 260
            QN  + +  +A + LW   D   R   +  N A+  VW  LY+  ++  +D+  +  +S 
Sbjct: 933  QNTDQNISLSALTLLWTISDFIYRKMESVGNDASEAVWMVLYTCLSESCVDSRFAVRKSA 992

Query: 259  IQ 254
             Q
Sbjct: 993  CQ 994


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 433  QNESEVVVSNACSSLWC--DMAVRHSHTAPN*ANRTVWRCLYSFENQRLIDALSSFSRSI 260
            QN  + +  +A + LW   D   R   +  N A+  VW  LY+  ++  +D+  +  +S 
Sbjct: 933  QNTDQNISLSALTLLWTISDFIYRKMESVGNDASEAVWMVLYTCLSESCVDSRFAVRKSA 992

Query: 259  IQ 254
             Q
Sbjct: 993  CQ 994


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = -3

Query: 510 PGFEVRCTVDVHRLLSWWSSCSYQAPRTS--RKWL*ATHARRCGATWRCDTHTPPLTKRT 337
           P  ++RC   +         C  +  R+S   +++     RRC    RC T T P +  T
Sbjct: 286 PQKKIRCVYSIDAEEIEGKKCMLECIRSSCLPRYVECHRRRRCSRKQRCHTTTQPPSPTT 345

Query: 336 EQCGDAFTRSRINVS 292
           E    + T   +N +
Sbjct: 346 ESLPTSTTTYEMNTT 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,956,527
Number of Sequences: 27780
Number of extensions: 314269
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)