Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13l15r
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            27   0.17 
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              24   1.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.4  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 245 LTCLKDLIATQSHRSIQVH*TSYPLGHDHFKLK 343
           +T LKD I    H+  QVH   +P+G+D  K K
Sbjct: 54  ITWLKDGIELYHHKFFQVH--EWPVGNDTLKSK 84


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 282 CDCVAIKSFRQVNISITCSRMTSKMKTNIRQQKSN 178
           C CV   +  ++   +   +   K +T I QQK+N
Sbjct: 11  CVCVGALTIEELKTRLHTEQSVCKTETGIDQQKAN 45


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 328 PLQIKILLYLLHFIMYFNKLSSCILVIIF*KIAVLL*ASNLFSRNIKCKNFTL 486
           P+   IL +++  + + + + + ++V IF     L   SNLF  N+   NF +
Sbjct: 49  PMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLM 101


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 326 RGLKDKTSSVLVSSDAIVWRSNPLGR 249
           +G+KDK S  + S    +W S P+ R
Sbjct: 50  KGIKDKLSHFIESGITAIWLS-PINR 74


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -1

Query: 200 TLGNKNQINHKYKIRNYSTEC 138
           T+ N N   + Y   NY+  C
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNC 109


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -1

Query: 200 TLGNKNQINHKYKIRNYSTEC 138
           T+ N N   + Y   NY+  C
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNC 109


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -1

Query: 200 TLGNKNQINHKYKIRNYSTEC 138
           T+ N N   + Y   NY+  C
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNC 109


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -1

Query: 200 TLGNKNQINHKYKIRNYSTEC 138
           T+ N N   + Y   NY+  C
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNC 109


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 291 IERCDCVAIKSFRQVNISITCSRMTSKMKTNIRQQKS 181
           IER   +  +    V  S+TC R + + + +   +KS
Sbjct: 248 IERAKSIRARRTECVTNSVTCDRPSDEAEPSSTSKKS 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,535
Number of Sequences: 438
Number of extensions: 3861
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)