Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13l15f
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   1.8  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    26   4.2  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    26   5.6  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    26   5.6  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   5.6  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 336 RHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEEPSS 458
           +H L+++     SV+P V+SA S+ +L+  +     EEP +
Sbjct: 148 QHSLQTIGYICESVSPEVLSAQSNAILTAVVAGARKEEPDA 188


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +2

Query: 443 RRAIKYPMVGRRNSHYNGVNINCPTEG*R*IHIRLTLIKFYLFND*GILYQSTKGSV 613
           +R I  P + + +S +  + +N P +G + IHI L LIK+   +  G +    KGSV
Sbjct: 138 KRFINLPKL-QSDSIFKILGLNVP-KGWKGIHISLNLIKWNSLSSRGRITNIIKGSV 192


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 490 IMRIAPAHHWVLDGSSNNTIPIKP 419
           + R+A  HHW+LD  S    P KP
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAP-KP 31


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 490 IMRIAPAHHWVLDGSSNNTIPIKP 419
           + R+A  HHW+LD  S    P KP
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAP-KP 31


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 490 IMRIAPAHHWVLDGSSNNTIPIKP 419
           + R+A  HHW+LD  S    P KP
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAP-KP 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,396
Number of Sequences: 5004
Number of extensions: 50354
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)