Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13l09r
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.94 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.8  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 495 QAVESLGLLSDSEIVKCGTPLDTISHYLSK 406
           + +E+L    D +I+ C TP+  +SH L K
Sbjct: 206 ERLEALCWTQDEDII-CSTPIGNLSHALLK 234


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 495 QAVESLGLLSDSEIVKCGTPLDTISHYLSK 406
           + +E+L    D +++ C TP+  +SH L K
Sbjct: 153 ERLEALCWTQDEDVI-CSTPIGNLSHALLK 181


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 213 EIQERGVVLPFAPVVYKSLLSRLRSDGITAKET 115
           E+++     PF PV++ S L  +  +GI  + T
Sbjct: 169 ELRDLKETYPFNPVLFISSLENISLNGIDPELT 201


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 213 EIQERGVVLPFAPVVYKSLLSRLRSDGITAKET 115
           E+++     PF PV++ S L  +  +GI  + T
Sbjct: 207 ELRDLKETYPFNPVLFISSLENISLNGIDPELT 239


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +1

Query: 463 ITEQSQGFYGLSSDWPQLFCCPGLQVVIEYRLVQQTK------KFTGKLTPCNV 606
           + ++S  F G +    ++F       VIEYR+ +  K      +F     PCNV
Sbjct: 144 LKQRSSEFCGKNIGMKRIFTSSQNIAVIEYRIPKSGKGFSLFARFLKNPRPCNV 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,209
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)