Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13l09f
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 61 1e-10
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 28 1.0
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 4.1
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 5.5
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 5.5
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 26 5.5
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 5.5
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 25 7.2
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 9.5
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 61.3 bits (142), Expect = 1e-10
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Frame = +1
Query: 166 REDQSVWERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQSYINAG-AIVQED----IS 330
R + E R+ +P K L G ++ ++ S++RA+ + + G +V E
Sbjct: 9 RAETKPLEERSALTPRTAKILADAGFQITIERSSQRAFKDKEFERLGFPMVPEGSWRHAP 68
Query: 331 EASVIFGVKQTPIDLLIPNK-TYCFFSHTIKAQEANMPMLDAMLAKNIRLIDYEKLMDDK 507
+ + I G+K+ P + P K T+ F+H K QE +L A N L D E L DD
Sbjct: 69 KDAYIIGLKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNGLLYDLEFLQDDN 128
Query: 508 GNRVVAFGKYAGVAG 552
G RV AFG +AG AG
Sbjct: 129 GRRVAAFGYHAGFAG 143
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 604 GVREPIASDRVRAECSPFLQLLRTSRRRLPDSPCRPSTSRSLLNECSL 461
G++E I ++ E P QLL SR+ P P PS + C+L
Sbjct: 203 GIKEYIKKCQL-TELDPTQQLLTQSRKNQPVPPDSPSIPNDSIENCNL 249
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 189 KTSAIFTIEREKSRQRRSEGHRPALQSASIPYAVLHK 299
KTSAI E K + RS S +P +VLH+
Sbjct: 402 KTSAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHR 438
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 369 NRSLLHSKYNAGFADVLLHYRPSIYVRLHRVCS 271
N + H K+ F + LL Y PSI+ L ++ S
Sbjct: 626 NLGIQHDKHPTKFMEDLLTYGPSIFEELRKLNS 658
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 187 ERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQS 291
E+ PF+P +K++ +G K PSN + P +S
Sbjct: 483 EQNTPFTPPLLKTVNLDGNKDFTFPSNSQNSPSKS 517
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 597 ESQ*PQTESVQNVHHSCNSCVLPEGDYPIPLV 502
ES P E V+N+H L + +Y IP+V
Sbjct: 63 ESSEPTHEDVRNIHSHTKISSLKKNNYGIPVV 94
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 346 FGVKQTPIDLLIPNKTYCFFSHTIKAQEANMPMLDAMLAKNIRLIDYEKLMDDKGN 513
F ++ + DL+ + T+C ++HT E P + A L++ EK+ GN
Sbjct: 691 FDIRASGKDLVPNHLTFCLYTHTAIFDEKYWP--KGIRANGHLLMNGEKMSKSTGN 744
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 61 ITMLHKSATLRSKGQIIQNV-AFYSSTKTRRVIAIRREDQSVWERRA 198
++ +HK A L K Q++ + AF S T + I R+D S W+ R+
Sbjct: 132 VSTMHKEA-LVDKTQLLSTMMAFRSITGLQPEIVYARKDVSPWKLRS 177
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 377 SRSIGVCFTPNITLASLMSSCTIAPAF 297
++ +G C NI LA+L+ CT A+
Sbjct: 295 NKEVGYCQAMNIVLAALLVYCTEEQAY 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,294
Number of Sequences: 5004
Number of extensions: 54389
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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