Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13l09f
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791... 141 5e-34
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 29 3.2
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 29 3.2
08_02_0894 + 22346027-22347925 29 4.3
02_04_0332 + 22093387-22093550,22093753-22094056 29 4.3
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955... 28 5.6
10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373 28 7.5
08_02_1049 + 23944526-23945473 28 7.5
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 28 7.5
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 7.5
02_05_0519 - 29708600-29709079 28 7.5
11_06_0404 - 23153454-23154305,23154335-23155627 27 9.9
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558... 27 9.9
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033... 27 9.9
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 27 9.9
>02_05_0981 -
33278735-33278746,33278882-33279022,33279145-33279199,
33279787-33279950,33280043-33280139,33280507-33280678,
33281107-33281182,33281545-33281661,33281928-33282007,
33282225-33282398,33282636-33282765,33282855-33282941,
33283039-33283302,33284131-33284256
Length = 564
Score = 141 bits (341), Expect = 5e-34
Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 7/171 (4%)
Frame = +1
Query: 151 VIAIRREDQSVWERRAPFSPSNVKSLVREGVK-------VIVQPSNRRAYPMQSYINAGA 309
V+ I E ++WERRAP +PS+ L+ G K +IVQPS +R + Y + G
Sbjct: 52 VVGILAETANMWERRAPLTPSHCARLLLGGGKRGTGVNRIIVQPSTKRIHHDAQYEDVGC 111
Query: 310 IVQEDISEASVIFGVKQTPIDLLIPNKTYCFFSHTIKAQEANMPMLDAMLAKNIRLIDYE 489
+ +D+SE +I G+KQ +++++P++ Y FFSHT KAQ+ NMP+LD +L K + L DYE
Sbjct: 112 EISKDLSECGLIIGIKQPKLEMILPHRAYGFFSHTHKAQKENMPLLDEILEKRVSLFDYE 171
Query: 490 KLMDDKGNRVVAFGKYAGVAGMVNIXXXXXXXXXXXXXXTPFMHIGPAHNY 642
+ D G R++AFGK+AG AG+++ TPF+ +G +H Y
Sbjct: 172 LIAGDDGKRLLAFGKFAGRAGLIDFLHGLGQRYLSLGYSTPFLSLGQSHMY 222
>07_03_0244 - 15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 608 VWCPRANSLRPSPCRMFTIPATPAYF 531
+WCP ++L P PC +F P + AYF
Sbjct: 932 LWCPLWHTLIPKPCLVFLSPWS-AYF 956
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 646 SGSCERDLYA*RECGVREPIASDRVRAECSPFLQLLRTSRRRLPD--SPCRPSTS 488
SGS ER+ ++ GVR P ++ R ++ R S ++ D +P RPST+
Sbjct: 289 SGSTERNKLTTKQTGVRRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTA 343
>08_02_0894 + 22346027-22347925
Length = 632
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 595 EPIASDRVRAECSPFLQLLRTSRRRLPDSPCRPSTSRSL 479
EP+ D RAE FL+ + RR P SP + R L
Sbjct: 25 EPMLFDGARAEAERFLRAVDDLRRLAPPSPAAVGSPRRL 63
>02_04_0332 + 22093387-22093550,22093753-22094056
Length = 155
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 405 LSYNQGTGSQHANVGCYAGKEH----SFNRLREVDGRQGESGSRLREVRRSCRNGEHSAR 572
++Y++GTG Q + GC + E + R+VDG ++GS R H+ R
Sbjct: 1 MTYSRGTGCQANDAGCASSHERRQRAGRSCARDVDGMGYDTGSIPRFA------SSHARR 54
Query: 573 TRSEAIGSRTP 605
R A+G+ P
Sbjct: 55 WRRTAVGAWLP 65
>05_05_0029 +
21694448-21694567,21694666-21695117,21695214-21695529,
21695863-21697122
Length = 715
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 465 EHSFNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSE---AIGSRTPHSLYAYRSRS 635
E FN R+ E G++L ++ ++C + +A+ + + +G + +L+A S S
Sbjct: 285 EKKFNNCRDSTAGDVELGNKLNQIEKACEQRDRAAQIKDKEVSEVGGPSDKNLFADDSPS 344
Query: 636 Q 638
+
Sbjct: 345 E 345
>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
Length = 814
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 387 VRYK*INRSLLHSKYNAGFADVLLHYRPSIYVRLHRVCSPIGGLDDDLHSFSDETFHVRW 208
V+Y ++ L+ KYN+ F ++L + V S I G +L+ E+ V+W
Sbjct: 281 VQYINVSEGLVGIKYNSSFVEILFNMFSQFRFSSQGVVSNIFGKGPNLYVDPTESASVQW 340
>08_02_1049 + 23944526-23945473
Length = 315
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 489 EVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQ 638
+V R SG+ LR+ CR+ R R G+R SL+ Y R +
Sbjct: 64 DVAARCAASGAALRKTGTQCRHKLEKLRKRYRIEGARPVTSLWPYFRRME 113
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 133 KNKKQRFELFDPLNGESPIC 74
KN + RFE F L G+ P+C
Sbjct: 322 KNSRHRFEFFMDLVGDQPVC 341
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 599 PRANSLRPSPCRMFTIPATPAYFPKATTRFPLSSIN 492
P S+ P+P P PA P T +FP SS N
Sbjct: 101 PPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSAN 136
>02_05_0519 - 29708600-29709079
Length = 159
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 559 SPFLQLLRTSRRRLPDSPCRPSTSRSLLNECSLPA*HPTLA-CWLPVP 419
+PF++ + SRR P RP TS ++ + +P PT+ ++P+P
Sbjct: 58 TPFMRYIEASRRGRVGLPPRPPTSAPVVPQARMPT--PTVQNSFVPLP 103
>11_06_0404 - 23153454-23154305,23154335-23155627
Length = 714
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 333 FADVLLHYRPSIYVRLHRVCSPIGG 259
+AD+L+H PS H++C GG
Sbjct: 498 WADLLVHIAPSWNAEAHKICLEYGG 522
>10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,
5587181-5587234,5587309-5588214,5588313-5590283,
5590833-5591235,5591845-5591857
Length = 1321
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 297 YVRL-HRVCSPIGGLDDDLHSFSDETF 220
Y+RL +C P G DDDL++ D F
Sbjct: 1191 YIRLPDEICVPCTGNDDDLNNLIDNVF 1217
>03_06_0524 -
34502286-34502609,34502998-34503084,34503280-34503360,
34503962-34504114,34504898-34504954,34505050-34505296,
34505412-34505527,34506074-34506225,34506713-34506902,
34506976-34507169,34507256-34507388
Length = 577
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = -3
Query: 357 LHSKYNAGFADVLLHYRPSIYVRLHRVCSPIGGLDDDLHSFSDETFHVRW 208
+ Y+ GF V I + L + P G D ++S++D+ W
Sbjct: 484 MRGPYSGGFGGVSFRGDMDIALALRTIVFPTGSRFDTMYSYTDKNARQEW 533
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 21 LSIKFTVKCLIILNYNVTQIGDSPFKGSNNSKRCF 125
L + FT+ C IL+ + DSPF S S F
Sbjct: 634 LKVCFTIVCACILSSGEHNLPDSPFASSTKSTAFF 668
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,270,259
Number of Sequences: 37544
Number of extensions: 360132
Number of successful extensions: 1039
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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