Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13l09f
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011078-1|AAR82744.1|  972|Drosophila melanogaster SD02276p pro...   268   6e-72
AE014134-1342|AAF52559.2|  928|Drosophila melanogaster CG7144-PA...   268   6e-72
AY069568-1|AAL39713.1|  513|Drosophila melanogaster LD29830p pro...    34   0.15 
AF055719-1|AAC32822.3|  513|Drosophila melanogaster splicing fac...    34   0.15 
AE014134-1720|AAF52825.1|  513|Drosophila melanogaster CG4602-PA...    34   0.15 
BT030125-1|ABN49264.1| 1429|Drosophila melanogaster IP14232p pro...    30   2.4  
AE014297-1348|ABI31163.1| 1137|Drosophila melanogaster CG14713-P...    30   2.4  
BT001594-1|AAN71349.1|  766|Drosophila melanogaster RE28271p pro...    30   3.2  
AY070891-1|AAL48513.1|  319|Drosophila melanogaster LD46389p pro...    30   3.2  
AE013599-2644|AAF57731.1|  766|Drosophila melanogaster CG5726-PA...    30   3.2  
BT023505-1|AAY84905.1| 1231|Drosophila melanogaster LD15018p pro...    29   5.5  
AE014298-1282|AAF46448.3| 1231|Drosophila melanogaster CG7065-PA...    29   5.5  
BT021302-1|AAX33450.1|  889|Drosophila melanogaster RE22038p pro...    29   7.3  
AY061075-1|AAL28623.1|  245|Drosophila melanogaster LD05080p pro...    29   7.3  
AE014298-1512|AAF47964.1|  889|Drosophila melanogaster CG2202-PA...    29   7.3  
AE013599-3544|AAF46957.1|   89|Drosophila melanogaster CG9873-PA...    29   7.3  
BT023213-1|AAY55629.1|   89|Drosophila melanogaster IP02962p pro...    28   9.6  

>BT011078-1|AAR82744.1|  972|Drosophila melanogaster SD02276p
           protein.
          Length = 972

 Score =  268 bits (656), Expect = 6e-72
 Identities = 125/175 (71%), Positives = 145/175 (82%)
 Frame = +1

Query: 127 YSSTKTRRVIAIRREDQSVWERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQSYINAG 306
           ++  +  RVIAIRREDQSVWERRAPF P++V+ LV++ VKVIVQPSNRRAYPMQ+Y+ AG
Sbjct: 59  FTRQRHSRVIAIRREDQSVWERRAPFGPTHVQKLVKQNVKVIVQPSNRRAYPMQAYMQAG 118

Query: 307 AIVQEDISEASVIFGVKQTPIDLLIPNKTYCFFSHTIKAQEANMPMLDAMLAKNIRLIDY 486
           A +QEDIS+ASVIFGVKQ PID LIP KTYCFFSHTIKAQE+NMP+LDA+L K IRLIDY
Sbjct: 119 AHIQEDISDASVIFGVKQVPIDALIPGKTYCFFSHTIKAQESNMPLLDAILEKKIRLIDY 178

Query: 487 EKLMDDKGNRVVAFGKYAGVAGMVNIXXXXXXXXXXXXXXTPFMHIGPAHNYRNS 651
           E+++D++G R VAFGKYAGVAGMVNI              TPFMHIGPAHNYRNS
Sbjct: 179 ERIIDERGARQVAFGKYAGVAGMVNILHGIGLRLLALGHHTPFMHIGPAHNYRNS 233


>AE014134-1342|AAF52559.2|  928|Drosophila melanogaster CG7144-PA
           protein.
          Length = 928

 Score =  268 bits (656), Expect = 6e-72
 Identities = 125/175 (71%), Positives = 145/175 (82%)
 Frame = +1

Query: 127 YSSTKTRRVIAIRREDQSVWERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQSYINAG 306
           ++  +  RVIAIRREDQSVWERRAPF P++V+ LV++ VKVIVQPSNRRAYPMQ+Y+ AG
Sbjct: 15  FTRQRHSRVIAIRREDQSVWERRAPFGPTHVQKLVKQNVKVIVQPSNRRAYPMQAYMQAG 74

Query: 307 AIVQEDISEASVIFGVKQTPIDLLIPNKTYCFFSHTIKAQEANMPMLDAMLAKNIRLIDY 486
           A +QEDIS+ASVIFGVKQ PID LIP KTYCFFSHTIKAQE+NMP+LDA+L K IRLIDY
Sbjct: 75  AHIQEDISDASVIFGVKQVPIDALIPGKTYCFFSHTIKAQESNMPLLDAILEKKIRLIDY 134

Query: 487 EKLMDDKGNRVVAFGKYAGVAGMVNIXXXXXXXXXXXXXXTPFMHIGPAHNYRNS 651
           E+++D++G R VAFGKYAGVAGMVNI              TPFMHIGPAHNYRNS
Sbjct: 135 ERIIDERGARQVAFGKYAGVAGMVNILHGIGLRLLALGHHTPFMHIGPAHNYRNS 189


>AY069568-1|AAL39713.1|  513|Drosophila melanogaster LD29830p
           protein.
          Length = 513

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 23/59 (38%), Positives = 28/59 (47%)
 Frame = +3

Query: 459 GKEHSFNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRS 635
           GK  S +R +    R   S SR R  R   R G+HS  +RS    SR+ H     RSRS
Sbjct: 333 GKHSSRSRSKRSRSRHRRSSSRSRRSRS--RGGKHSRSSRSRGKRSRSRHRRSTSRSRS 389



 Score = 28.7 bits (61), Expect = 7.3
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 501 RQGESGSRLREV----RRSCRNGEHSARTRSEAIGSRTPHSLYAYRSR 632
           R   SGSR R      RRS   G+HS+R+RS+   SR+ H   + RSR
Sbjct: 311 RSRRSGSRERRSVSRSRRSRSRGKHSSRSRSKR--SRSRHRRSSSRSR 356


>AF055719-1|AAC32822.3|  513|Drosophila melanogaster splicing factor
           SRp54 protein.
          Length = 513

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 23/59 (38%), Positives = 28/59 (47%)
 Frame = +3

Query: 459 GKEHSFNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRS 635
           GK  S +R +    R   S SR R  R   R G+HS  +RS    SR+ H     RSRS
Sbjct: 333 GKHSSRSRSKRSRSRHRRSSSRSRRSRS--RGGKHSRSSRSRGKRSRSRHRRSTSRSRS 389



 Score = 28.7 bits (61), Expect = 7.3
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 501 RQGESGSRLREV----RRSCRNGEHSARTRSEAIGSRTPHSLYAYRSR 632
           R   SGSR R      RRS   G+HS+R+RS+   SR+ H   + RSR
Sbjct: 311 RSRRSGSRERRSVSRSRRSRSRGKHSSRSRSKR--SRSRHRRSSSRSR 356


>AE014134-1720|AAF52825.1|  513|Drosophila melanogaster CG4602-PA
           protein.
          Length = 513

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 23/59 (38%), Positives = 28/59 (47%)
 Frame = +3

Query: 459 GKEHSFNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRS 635
           GK  S +R +    R   S SR R  R   R G+HS  +RS    SR+ H     RSRS
Sbjct: 333 GKHSSRSRSKRSRSRHRRSSSRSRRSRS--RGGKHSRSSRSRGKRSRSRHRRSTSRSRS 389



 Score = 28.7 bits (61), Expect = 7.3
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 501 RQGESGSRLREV----RRSCRNGEHSARTRSEAIGSRTPHSLYAYRSR 632
           R   SGSR R      RRS   G+HS+R+RS+   SR+ H   + RSR
Sbjct: 311 RSRRSGSRERRSVSRSRRSRSRGKHSSRSRSKR--SRSRHRRSSSRSR 356


>BT030125-1|ABN49264.1| 1429|Drosophila melanogaster IP14232p
           protein.
          Length = 1429

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +1

Query: 259 PSNRRAYPMQSYINAGAIVQEDISEASVIFGVKQTPIDLLIPNKTYCFFSHTIKAQEANM 438
           P  R  +  ++  NA  +   + +E   + G+K  P   L    +    +HT  A + +M
Sbjct: 328 PEKRAKFISENSTNAQQLTLPNTAEVWSLAGMKAVPKAPLTTTTSVPLLNHTDLANDIDM 387

Query: 439 PMLDAMLAKNIRLIDY 486
           P+    L K   L+D+
Sbjct: 388 PLNKTELHKEKNLLDW 403


>AE014297-1348|ABI31163.1| 1137|Drosophila melanogaster CG14713-PB
           protein.
          Length = 1137

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +1

Query: 259 PSNRRAYPMQSYINAGAIVQEDISEASVIFGVKQTPIDLLIPNKTYCFFSHTIKAQEANM 438
           P  R  +  ++  NA  +   + +E   + G+K  P   L    +    +HT  A + +M
Sbjct: 328 PEKRAKFISENSTNAQQLTLPNTAEVWSLAGMKAVPKAPLTTTTSVPLLNHTDLANDIDM 387

Query: 439 PMLDAMLAKNIRLIDY 486
           P+    L K   L+D+
Sbjct: 388 PLNKTELHKEKNLLDW 403


>BT001594-1|AAN71349.1|  766|Drosophila melanogaster RE28271p
           protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +3

Query: 474 FNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQ 638
           FNR  + D   G S  + R    SC +  HS   RSE  G+   +S++  R  SQ
Sbjct: 468 FNRNHDGDQSNGRSRDQQRRYSVSCDDDHHS--VRSEGGGNLRLYSIHDRRKHSQ 520


>AY070891-1|AAL48513.1|  319|Drosophila melanogaster LD46389p
           protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +3

Query: 474 FNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQ 638
           FNR  + D   G S  + R    SC +  HS   RSE  G+   +S++  R  SQ
Sbjct: 21  FNRNHDGDQSNGRSRDQQRRYSVSCDDDHHS--VRSEGGGNLRLYSIHDRRKHSQ 73


>AE013599-2644|AAF57731.1|  766|Drosophila melanogaster CG5726-PA
           protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +3

Query: 474 FNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQ 638
           FNR  + D   G S  + R    SC +  HS   RSE  G+   +S++  R  SQ
Sbjct: 468 FNRNHDGDQSNGRSRDQQRRYSVSCDDDHHS--VRSEGGGNLRLYSIHDRRKHSQ 520


>BT023505-1|AAY84905.1| 1231|Drosophila melanogaster LD15018p
           protein.
          Length = 1231

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 498 GRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQLP 644
           GR+    SR R  RRS   G   +R+RS    SR+P + Y  R R + P
Sbjct: 460 GRRAVRRSRSRSPRRSYNRGSTRSRSRSMRHRSRSP-AHYRGRGRGREP 507


>AE014298-1282|AAF46448.3| 1231|Drosophila melanogaster CG7065-PA
           protein.
          Length = 1231

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 498 GRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQLP 644
           GR+    SR R  RRS   G   +R+RS    SR+P + Y  R R + P
Sbjct: 460 GRRAVRRSRSRSPRRSYNRGSTRSRSRSMRHRSRSP-AHYRGRGRGREP 507


>BT021302-1|AAX33450.1|  889|Drosophila melanogaster RE22038p
           protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 393 VLFFLSYNQGTGSQHANVGCYAGK 464
           V+  L YNQG  SQH+  G  AGK
Sbjct: 866 VMAHLMYNQGGSSQHSQSGSDAGK 889


>AY061075-1|AAL28623.1|  245|Drosophila melanogaster LD05080p
           protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 393 VLFFLSYNQGTGSQHANVGCYAGK 464
           V+  L YNQG  SQH+  G  AGK
Sbjct: 222 VMAHLMYNQGGSSQHSQSGSDAGK 245


>AE014298-1512|AAF47964.1|  889|Drosophila melanogaster CG2202-PA
           protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 393 VLFFLSYNQGTGSQHANVGCYAGK 464
           V+  L YNQG  SQH+  G  AGK
Sbjct: 866 VMAHLMYNQGGSSQHSQSGSDAGK 889


>AE013599-3544|AAF46957.1|   89|Drosophila melanogaster CG9873-PA
           protein.
          Length = 89

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 429 SQHANVGCYAGKEHSFNRLREVDGRQGESGSRLR---EVRRSCRNG 557
           S+ +  G  A K  SFN  R+  GR+ +   R+R    +RR  RNG
Sbjct: 32  SKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNG 77


>BT023213-1|AAY55629.1|   89|Drosophila melanogaster IP02962p
           protein.
          Length = 89

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 429 SQHANVGCYAGKEHSFNRLREVDGRQGESGSRLR---EVRRSCRNG 557
           S+ +  G  A K  SFN  R+  GR+ +   R+R    +RR  RNG
Sbjct: 32  SKCSQSGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNG 77


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,049,823
Number of Sequences: 53049
Number of extensions: 610027
Number of successful extensions: 1520
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)