Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13l09f
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...   217   4e-57
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z75548-5|CAD31696.1|  322|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    28   6.7  
Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score =  217 bits (531), Expect = 4e-57
 Identities = 100/166 (60%), Positives = 124/166 (74%)
 Frame = +1

Query: 154 IAIRREDQSVWERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQSYINAGAIVQEDISE 333
           I IRRE  + WERRAP +P++VK L + GV V++QPSNRRAYP+Q YI+AGAIV+ED+SE
Sbjct: 32  IGIRRETVNSWERRAPLAPTHVKRLTKSGVNVLIQPSNRRAYPIQDYISAGAIVREDLSE 91

Query: 334 ASVIFGVKQTPIDLLIPNKTYCFFSHTIKAQEANMPMLDAMLAKNIRLIDYEKLMDDKGN 513
           A +I  VK  PID LIPNKTY FFSHTIKAQ+ NM MLD +L +NIRL+DYEK+ DDKG 
Sbjct: 92  AHIIMSVKSVPIDQLIPNKTYAFFSHTIKAQQDNMEMLDTILQRNIRLLDYEKICDDKGK 151

Query: 514 RVVAFGKYAGVAGMVNIXXXXXXXXXXXXXXTPFMHIGPAHNYRNS 651
           R+V FGK+AG AG ++I              TPF+H+G AHNY +S
Sbjct: 152 RLVMFGKWAGNAGFIDILHGIGLRLLALGHNTPFLHMGLAHNYNDS 197


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 423 TGSQHANVGCYAGKEHSFNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRT 602
           +GS  AN+G  + +    +++  V+       S      RSCR    S   R+    + +
Sbjct: 162 SGSSEANIGMISSRSAPMSKMPSVEKLDNRHSSIRGYNNRSCRRTVLSGLDRN---ANHS 218

Query: 603 PHSLYAYRSRSQ 638
           P+ +Y  RSRS+
Sbjct: 219 PNGIYVRRSRSK 230


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
 Frame = +1

Query: 352 VKQTPID--LLIPNKTYCFFSHTIKAQEANMPMLDAMLAKNIRLIDYEKLMDDK---GNR 516
           +++ PID  +++P+K  C    T+K QE    +    + ++++L   E+ + DK   GNR
Sbjct: 205 MQRCPIDPYIMLPDKCECVDYQTLKLQENPEDVPHGEMPRHLQLFT-ERYLTDKVVPGNR 263

Query: 517 VVAFGKYA 540
           V   G Y+
Sbjct: 264 VTIVGVYS 271


>U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical
           protein T12C9.1 protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +1

Query: 121 AFYSSTKTRRVIAIRREDQSVWERRAPFSPSNVKSLVREGVKVIVQPSNRRAYPMQSYIN 300
           A Y +    R+   + ED++V+E+R P    N K  V++G+K +   S+  ++    + N
Sbjct: 128 ASYQTMCNARIALHKAEDKTVFEKRTP-KAVNYKEAVKQGMKDVTLASDWVSWSFDEFSN 186


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +3

Query: 462 KEHSFNRLREVDGRQGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQ 638
           +  S +R R     +  SGSR    RRS R     AR R  +   +TP    + RSRSQ
Sbjct: 129 RSRSRSRSRSRSYSRSRSGSRRSSRRRSRRRSSLKARGRRASTAKKTPAKRRS-RSRSQ 186


>AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5b protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 258 ALQSASIPYAVLHKCWGDSAGGHQRSQRYIWSEA 359
           +LQS  +P+  +H   G  +GGHQ + ++I S +
Sbjct: 398 SLQSIWLPFGQIHLLDGTGSGGHQEALQHIESRS 431


>Z75548-5|CAD31696.1|  322|Caenorhabditis elegans Hypothetical
           protein R90.5 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 577 RVRAEC--SPFLQLLRTSRRRLPDSPCRPSTSRSLLNE 470
           R R EC  +  L+L  TS+R   D  C PS +R  LNE
Sbjct: 102 RSRTECPEAESLRLPLTSKRSAGDLSCPPSPTRRNLNE 139


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 504 QGESGSRLREVRRSCRNGEHSARTRSEAIGSRTPHSLYAYRSRSQ 638
           +  SGSR    RRS R     AR R  +   +TP    + RSRSQ
Sbjct: 149 RSRSGSRRSSRRRSRRRSSSKARGRRASTAKKTPAKRRS-RSRSQ 192


>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 187 ERRAPFSPSNVKSLVREGVKVIVQPSN--RRAYPMQSYINAGAIV--QEDISEASVIFGV 354
           E+R   SP+ V  L + G+ V+++ +      Y  + Y+ +GA V    ++    ++  V
Sbjct: 41  EKRVSLSPNGVALLKKNGISVLIEENAGVLAGYSNEEYVRSGADVGKHNEVFNTDIMLKV 100

Query: 355 KQTPIDLLIPNKTYCFFSHTIKAQEANMPMLDAM 456
           +    + +   K+ C     I   + N  +LD++
Sbjct: 101 RPPTENEVSKLKSGCTLISFIHPGQ-NQALLDSL 133


>Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical
           protein W08G11.3a protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 498 GRQGESGSRLREVRRSCRNGEHSARTRSEA 587
           GR+  SGSR R+ RR  +   H  R+R+ +
Sbjct: 4   GRRSRSGSRDRDSRRRHKKHRHKRRSRTRS 33


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 592 PIASDRVRAECSPFLQLLRTS-RRRLPDSPCRPSTSRSLLNECSLPA*HPTLAC 434
           PI S   R +CS   Q    S   +   S C+PS  +S ++ C   +  P L C
Sbjct: 83  PIGSGMQRCKCSNEPQSSGCSCANKAQTSVCQPSCQKSCVDSCVRNSHQPQLLC 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,228
Number of Sequences: 27780
Number of extensions: 309955
Number of successful extensions: 914
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)