Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k18f
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   2.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.7  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   4.7  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   8.2  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 455 SRQSVITT-KYSSTSPLAETTPSTSPSQTLRMLRVSIMTWLPL 580
           SR +  T+  YS+T P    TPST+ S TL     S    +PL
Sbjct: 336 SRSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSIPL 378


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 262  HPRNRTSTNEKFDTLLGCYSKR---IVYGHHTSMYCR*F*SYCRRLAPF 125
            HP   +  NE++D LLG    +     YG H S       SY  RL PF
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSS-AMIVCSYLIRLRPF 2031


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 319 LSTPSRRAAQYLEPNLP*LHPRNRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F 155
           L T   R A++ E         N+ +T+E+F T LG  S  I+  +H S+  + F
Sbjct: 259 LRTFPLRIAKHSENGFLVAQHLNKLATDEQFATSLGIDSSLILEVYHNSLQTKEF 313


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -3

Query: 312 LPADELLSILNRISHSFTREIEHQQTKNLIHFLG 211
           LP+++LL++L ++S    + I+  +TK++   LG
Sbjct: 889 LPSNQLLAMLVKLSKKIMKCIDEIETKDIEEELG 922


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,024
Number of Sequences: 5004
Number of extensions: 51947
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)