Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13k18f
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 33 0.22
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 30 1.2
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.7
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 29 3.6
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198... 28 4.8
12_01_0248 - 1841454-1841820,1842223-1842728 28 6.3
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 27 8.4
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 27 8.4
>01_01_0977 -
7717808-7717837,7718227-7718327,7718449-7718548,
7718706-7718822,7718913-7718990,7719980-7720058,
7720184-7720249,7720373-7720441,7720890-7721188
Length = 312
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 125 LIENNFY*NWGFLNLLFRYQNEKLYSHLKLPNFL 24
LI F+ W FLN++F N+K+Y++ P F+
Sbjct: 114 LITGFFFFMWYFLNVIFNILNKKIYNYFPYPYFV 147
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 125 LIENNFY*NWGFLNLLFRYQNEKLYSHLKLPNFL 24
L+ F+ W FLN++F N+K++ + P F+
Sbjct: 100 LVTGFFFFMWYFLNVIFNILNKKIFDYFPYPYFV 133
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 406 PVTGSVL*PSNAPVHCAPAI*ISGTFS*LLSTPSRRAAQYLEPNLP*LHPRNRTSTNEKF 227
P+ S L N P PA +S + + +++A LE +L +HP + + T +
Sbjct: 1797 PLVQSSLSSQNPPAEAEPASTLSRETARDVQPERQQSASVLETSLQRMHPDDDSQTKHQL 1856
Query: 226 DTLL 215
+T+L
Sbjct: 1857 ETVL 1860
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 310 ECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQETLDHTYLPQPLSS-LDVSSKC 468
E +A+ K +++ +VH +EH+K K + Q D LSS ++ KC
Sbjct: 344 EIMALDTKIIEWDGKVHEMEEHVKAKEKKKDQIVADENQKLAALSSEVEWKLKC 397
>08_01_0238 -
1988688-1988830,1988989-1989257,1989339-1989600,
1989693-1989805,1990560-1990594,1990771-1990878,
1992178-1992483
Length = 411
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 407 SCDW-FSPLTFKCSCALCTCHLNFRNFLIIAKHSQQTS 297
S W F P T +C LCT LN FL+I++ S T+
Sbjct: 294 SASWNFPPFTLFLNC-LCTFILNMSVFLVISRTSALTA 330
>12_01_0248 - 1841454-1841820,1842223-1842728
Length = 290
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 235 RLLMFDFAGEAMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEH 375
RLLM +++ DSV D+ V + C RKF W ++ A H
Sbjct: 137 RLLMTHIPSQSLPDSVADSGCKVVYLCRDPNRKFR--PWDINEAHRH 181
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 IINSKNPSFNKSYFQLKWSKTSTIT--LKSSAVHACVVTVNYSL*ITPKKCIKFFVC*CS 250
I + ++ Y KWS T+ KS + +ACV T + L +T K + C CS
Sbjct: 387 IYGLEKSDLSEEYGVWKWSVTNLTCEDAKSKSAYACVSTNSECLDVTHGKLYIGYRCKCS 446
Query: 251 I 253
+
Sbjct: 447 L 447
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 446 HWMSRQSVITTKYSSTSPLAETTPSTSPSQTLR 544
HW + +S T YS SP+ E T+ +T R
Sbjct: 377 HWKTSRSACDTPYSRASPIPEQEVPTAQWKTSR 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,546
Number of Sequences: 37544
Number of extensions: 312841
Number of successful extensions: 808
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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