Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k18f
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone...    31   0.61 
AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear recep...    31   0.61 
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear recep...    28   4.3  
AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 10 protein.
          Length = 395

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 401 HRKPWITPISRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQTLRMLRVSIMTW 571
           HR   +   ++S YH+W  R   +  +++ T P+ ++ P T     L +LR S +T+
Sbjct: 182 HRVTSLRFANQSDYHYWHERDWFVMIEWAKTLPVFQSLPFT---DKLALLRHSAITY 235


>AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-10 protein.
          Length = 395

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 401 HRKPWITPISRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQTLRMLRVSIMTW 571
           HR   +   ++S YH+W  R   +  +++ T P+ ++ P T     L +LR S +T+
Sbjct: 182 HRVTSLRFANQSDYHYWHERDWFVMIEWAKTLPVFQSLPFT---DKLALLRHSAITY 235


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 301 VCWECLAIMRKFLKFKWQVHNAQEHLKVKGL 393
           VCW+C AI+ + L+F        E+L+  G+
Sbjct: 567 VCWQCEAIVTEMLRFTGSSFREAENLRKLGM 597


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 301 VCWECLAIMRKFLKFKWQVHNAQEHLKVKGL 393
           VCW+C AI+ + L+F        E+L+  G+
Sbjct: 567 VCWQCEAIVTEMLRFTGSSFREAENLRKLGM 597


>AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-101 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 425 ISRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQTLRMLRVSI 562
           I+++ YH+W  R   + T+Y+ T  + E       ++ +R   +++
Sbjct: 194 ITQTDYHYWHERDWFVLTEYAKTFKIFEALSYAEQAELVRHSAITL 239


>AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical
           protein H12C20.6a protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 425 ISRSHYHHWMSRQSVITTKYSSTSPLAETTPSTSPSQTLRMLRVSI 562
           I+++ YH+W  R   + T+Y+ T  + E       ++ +R   +++
Sbjct: 185 ITQTDYHYWHERDWFVLTEYAKTFKIFEALSYADKAELVRHSAITL 230


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 289 TEQLVCWECLAIMRKFLKFKWQVHNAQEH-LKVKGLNQS 402
           +E +V W CLA M K  KF+ +V+  +   L V GL +S
Sbjct: 584 SEGVVRWHCLAEMSKESKFEKRVNPGESRGLVVDGLFES 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,307
Number of Sequences: 27780
Number of extensions: 292341
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)