Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13k17f
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 142 2e-34
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 140 7e-34
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 29 3.2
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 29 3.2
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 29 3.2
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 29 3.2
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 29 3.2
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 29 3.2
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 28 4.2
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 28 4.2
Z81542-6|CAE17834.1| 365|Caenorhabditis elegans Hypothetical pr... 28 5.5
U40060-8|AAA81146.1| 218|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical ... 27 9.6
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 27 9.6
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 27 9.6
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 142 bits (344), Expect = 2e-34
Identities = 70/165 (42%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
Frame = +2
Query: 89 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 262
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71
Query: 263 VEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 442
+ +L + K + K +EF+++PTLK + K A++ ++ K+ L+ TGN LGLLAENG
Sbjct: 72 ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131
Query: 443 RLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEAAL 577
RL+KLE+V+++F+ +M AHRGE+ +V +A+ L + ++ L AL
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDAL 176
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 140 bits (339), Expect = 7e-34
Identities = 69/152 (45%), Positives = 105/152 (69%), Gaps = 2/152 (1%)
Frame = +2
Query: 128 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIK 301
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD + +L + K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63
Query: 302 TDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFK 481
+ K +EF+++PTLK + K A++ ++ K+ L+ TGN LGLLAENGRL+KLE+V+++F+
Sbjct: 64 DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123
Query: 482 IMMAAHRGEVTCEVVTAKPLDQAQRQNLEAAL 577
+M AHRGE+ +V +A+ L + ++ L AL
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSSNQKALSDAL 155
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 230 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 406
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 110 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 169
Query: 407 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 511
+G + + + + + + K+ +H G V
Sbjct: 170 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 204
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 230 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 406
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 235 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 294
Query: 407 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 511
+G + + + + + + K+ +H G V
Sbjct: 295 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 329
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 230 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 406
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 160 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 219
Query: 407 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 511
+G + + + + + + K+ +H G V
Sbjct: 220 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 254
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 230 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 406
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 173 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 232
Query: 407 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 511
+G + + + + + + K+ +H G V
Sbjct: 233 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 267
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 230 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 406
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 187 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 246
Query: 407 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 511
+G + + + + + + K+ +H G V
Sbjct: 247 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 281
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +2
Query: 230 SAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALK-HVANKISLSPT 406
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 234 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 293
Query: 407 TGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEV 511
+G + + + + + + K+ +H G V
Sbjct: 294 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 328
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 423 PSRLPVVGERLILLATCFNASTFMLLFN 340
P+ PV+GE ++ ATCF F L N
Sbjct: 51 PTWYPVMGEAWVIRATCFGVLVFNLYSN 78
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 279 PSSFSTMSSALVFDAAEKRAEAYRPSNPNTCTGGF 175
PS+ S MSS EK+A+ Y+ P GGF
Sbjct: 808 PSNVSNMSSRAELAGYEKQADEYKRHEPWYTVGGF 842
>Z81542-6|CAE17834.1| 365|Caenorhabditis elegans Hypothetical
protein F49A5.9 protein.
Length = 365
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 363 STFMLLFNVGLMMNSLSFASVLIDC*NWPSSFSTMSSALVFDAAEKRAEAYRPSNPNTCT 184
+TF++L L + + + ++ +P+ ST S A A+ PSN NTC
Sbjct: 47 ATFLVLLTYFLTKGRV-YETEIVTSSTFPALPSTSSKADSTSASTTTLLTPAPSNINTCV 105
Query: 183 GGFT 172
GFT
Sbjct: 106 FGFT 109
>U40060-8|AAA81146.1| 218|Caenorhabditis elegans Hypothetical
protein F38B6.2 protein.
Length = 218
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 216 AYRPSNPNTCTGGFTICAEA 157
A +P+NP TCTG CA A
Sbjct: 58 ACKPNNPFTCTGRNPFCATA 77
>AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical
protein Y39B6A.7 protein.
Length = 395
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +2
Query: 368 LKHVANKISLSPTTGNLL--GLLAENGRLDKLEAVINA 475
+K+V + +S +G+ + G+L++NG++++LE +I A
Sbjct: 180 IKNVTSSLSFLSCSGSTVDHGILSKNGQMERLEQMILA 217
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/85 (21%), Positives = 34/85 (40%)
Frame = +2
Query: 272 ELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLD 451
E G Q ++ L + L++ + + H N I + GN+ ++ +
Sbjct: 89 EGGSLQAYVREHGALDDATAVHVLRQLISAVSFMHRVNVIHRDLSAGNVF---IKDSKKK 145
Query: 452 KLEAVINAFKIMMAAHRGEVTCEVV 526
K+ + F + RGE TC +V
Sbjct: 146 KMTVKLGDFGLATTLGRGETTCTIV 170
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/85 (21%), Positives = 34/85 (40%)
Frame = +2
Query: 272 ELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLD 451
E G Q ++ L + L++ + + H N I + GN+ ++ +
Sbjct: 89 EGGSLQAYVREHGALDDATAVHVLRQLISAVSFMHRVNVIHRDLSAGNVF---IKDSKKK 145
Query: 452 KLEAVINAFKIMMAAHRGEVTCEVV 526
K+ + F + RGE TC +V
Sbjct: 146 KMTVKLGDFGLATTLGRGETTCTIV 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,135,259
Number of Sequences: 27780
Number of extensions: 266895
Number of successful extensions: 748
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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