Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k14f
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.5  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   1.5  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   3.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   4.5  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   6.0  
SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   7.9  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   7.9  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    24   7.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 241  SSLIQNVATQLIYTSNEVRSEF--FSKTDQYFKSCQCIYLFSLFCIFFSNKIHQLKKK 408
            SS+   VA  ++ T   +  EF    KT  YF     I   + FC+ F    ++L K+
Sbjct: 3055 SSIYDAVAQAVVNTHTSIVWEFKHLGKTS-YFSCLHFIRFLNTFCLIFGRDANKLSKE 3111


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 155 HIQNSKLQLHKNTFCTINLFSLPLSRETSYV 63
           HIQ+   Q+ ++ F  ++ +SLPLS ETS V
Sbjct: 3   HIQSIFAQI-RDPFRKLSFYSLPLSSETSSV 32


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 275 STRVMKFGQNSFLKQTSISNRVSVSTYFLYSVFFSQIKFIN*KKK 409
           S ++     +S +K  +I N+  V      +++FS IKFIN  KK
Sbjct: 223 SAQLADKASSSIIKPDAILNKKIVDEKANSNLYFSAIKFINVMKK 267


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 30  TEEMERSQNTDNIRRLSRKRKRE 98
           TE    SQN D+ +R  RK++R+
Sbjct: 39  TENFTASQNNDSAKREKRKKQRQ 61


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 344 VSTYFLYSVFFSQIKFIN 397
           VS +FLYSVFF  + F N
Sbjct: 340 VSQFFLYSVFFQGLWFGN 357


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 316 TDQYFKSCQCIYLFSLFC 369
           +D+ FK CQC Y    FC
Sbjct: 28  SDKNFKPCQCGYRVCRFC 45


>SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 110

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 19  KMIIQKKWKEVKIQITYDVSLERGRENKFMVQNVFLCSCSFEFCMW 156
           K+I   +W+   +  T + +LERGR+  +   N  L   S EF  W
Sbjct: 44  KLIWAGEWEWKPVNETNENNLERGRQ--YPSANSALMENSPEFAKW 87


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 30  TEEMERSQNTDNIRRLSRKR 89
           TE +ER Q +D  RRL +K+
Sbjct: 249 TEVLERQQRSDRERRLKQKQ 268


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 178 NIYLF*VSTYKTQNYNYIKIHFVP 107
           ++YL  +S ++TQ++N    H+VP
Sbjct: 304 DLYLLFLSLFRTQSFNDSMEHWVP 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,122
Number of Sequences: 5004
Number of extensions: 31701
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)