Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k14f
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0147 - 4968360-4969151,4969959-4970369,4970856-4970921,497...    27   4.3  
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    27   5.7  

>09_02_0147 -
           4968360-4969151,4969959-4970369,4970856-4970921,
           4972164-4972233,4972311-4972369
          Length = 465

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 164 LSFHIQNSKLQLHKNTFCT 108
           L  H+ N+K QLHK  FC+
Sbjct: 30  LIIHVNNTKYQLHKLKFCS 48


>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 9   SNVENDNTEEMERSQNTDNIRRLSRKRKRE 98
           SN E+D+ E   R +    +R+  R+R+RE
Sbjct: 217 SNSESDDKESKRRRKEEKRLRKEERRRRRE 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,721,794
Number of Sequences: 37544
Number of extensions: 148509
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)