Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k14f
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    30   0.74 
AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm rec...    28   3.0  
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    27   5.2  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    26   9.1  

>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 140 KLQLHKNTFCTINLFSLPLSRETSYVICILTSFHFFCIIIFY 15
           KL  H+N       FS+PL    +Y +C++  F+FF   IFY
Sbjct: 20  KLPRHQNIRYHEKCFSIPLH-TLNYFLCVII-FYFFVFTIFY 59


>AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm
           receptor protein 82 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 259 VATQLIYTSNEVRSEFFSKTDQYFKSCQCIYLFSLFCIFFSN 384
           ++TQ IY    V S  F + ++YFK  + +   SL  IFF+N
Sbjct: 105 LSTQFIYRYLSVASFHFLR-ERYFKGKRHVVWISLTSIFFTN 145


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
          protein F52G3.4 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = -3

Query: 47 SFHFFCIIIFYI 12
          S+HFFCI+IF+I
Sbjct: 5  SYHFFCILIFHI 16


>Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical
           protein F28C12.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 173 IFVLSFHIQNSKLQLHKNTFCTINLFSLPLSRETSYVICILTSFHFFCIIIFYIG 9
           IF+    +++ K Q+H+ ++     +    +  TS  +CIL    F CI++   G
Sbjct: 210 IFIYYLSVKSEK-QIHRTSYSPGERYIACENVATSQSVCILIVLQFACIMLSSFG 263


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 167 VLSFHIQNSKLQLHKNTFCTINLFSLPLSRETSYVICILTSFHFFCIIIFYIG 9
           +L F+I+  K ++H N F     +       TS  +C L    F C++I   G
Sbjct: 213 ILYFNIKAEK-RIHHNNFDPNQRYFAYEKMTTSKSVCTLIIIQFLCVLISSFG 264


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -3

Query: 269 CVATFCIKELRTIYASQITLLVNTYIRAN*KYIFVLSFHIQNSKLQLHKNTFCTINLFSL 90
           CV    IK    + AS +  L+   I +N   IFV+S       L+ H+  F +  +F  
Sbjct: 36  CVIIIVIKSTTDLMASILNFLLKERIISNGAIIFVIS--EGPCSLESHQFCFSSHVIFLS 93

Query: 89  PLSRETSYVIC 57
            L +   ++IC
Sbjct: 94  LLQQNLVWMIC 104


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = -3

Query: 221 QITLLVNTYIRAN*KYIFVLSFHIQNSKLQLHKNTFCTINLFSLPLSRETSYVICILTSF 42
           +IT LV  Y+ A   Y +   +++ + K  L +       L  LP   +TS +  + T F
Sbjct: 133 RITFLVLNYVIAC-VYFYPAYYYVPDQKQALQE---VFEMLPELPKELQTSKIFVLATDF 188

Query: 41  HFFCIIIFYIGS 6
            F  + +F++ +
Sbjct: 189 RFIVLPVFFMST 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,777,850
Number of Sequences: 27780
Number of extensions: 173205
Number of successful extensions: 539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)