Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13k13f
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0099 - 9983044-9983052,9983145-9983939,9984031-9984301,998... 29 3.1
06_03_0725 - 23894215-23894412,23894660-23894803,23895058-238951... 29 3.1
01_06_0355 + 28657833-28660665,28660762-28661126 29 3.1
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 4.1
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 5.5
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 28 5.5
09_04_0321 - 16664316-16664939,16665369-16666262 28 5.5
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 28 5.5
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041 28 7.2
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 27 9.6
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048... 27 9.6
>11_03_0099 -
9983044-9983052,9983145-9983939,9984031-9984301,
9984857-9985056
Length = 424
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 74 NNTNN*INGIFKKNHCFY 21
NN N+ ING FKKN C++
Sbjct: 163 NNLNDSINGNFKKNDCYW 180
>06_03_0725 -
23894215-23894412,23894660-23894803,23895058-23895126,
23895197-23895267,23895357-23895444,23895522-23895707,
23895805-23895903,23896002-23896082,23896575-23896634,
23896656-23896779,23897026-23897120,23897205-23897331,
23897559-23897662,23897883-23897945
Length = 502
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 233 EEPKPLHMWRRTELKRMELGEASVRRFQL 319
+E K +W+R + +R E+GE+ +RF+L
Sbjct: 460 KERKNRSLWKRLKQERQEMGESLTQRFRL 488
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 411 HNYHYYWEIKMLTDTYGTDILIGVGS-NKV---NISDPQFTFTSLIGQDEESYGLSY 569
H Y+E+ T+ + +D L+G GS KV N+ D Q ++ D E +S+
Sbjct: 759 HRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSF 815
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 369 SSGTAVVRGNCPMIHNYH-YYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQD 545
+ G + N H +H +Y K L +GT +L G NK++ D F +I D
Sbjct: 173 NGGLEIKHDNDAGKHFFHQHYGSTKPLISFFGTKLLSDKGVNKLSEDDVLRCFMVIIYLD 232
Query: 546 EESYGL 563
+ +G+
Sbjct: 233 FKDFGI 238
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 167 DLLTIIRFHCRIHLCNIRYVAKTHNSKPKF 78
D++ I R C I CNI+ T ++P F
Sbjct: 874 DIVNITRIFCSIKRCNIQKYPPTSTTRPSF 903
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 510 DRLCSLCSSRHL*EYQYHMYQLTF*FPNNN 421
+RLC++ +HL E QY M+ FPN N
Sbjct: 666 ERLCTMGYRKHLLEVQYRMHPGINKFPNAN 695
>09_04_0321 - 16664316-16664939,16665369-16666262
Length = 505
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 431 PIIMVVMNHWAVSPDHCSTRTIEWMKSDLL 342
P+I +M ++ H +T T+EW ++LL
Sbjct: 291 PLIRALMTDLFIAGSHTTTTTVEWAMAELL 320
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Frame = +3
Query: 393 GNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLS-- 566
G+C HN+ +W ++ G + S +N+ + IG + S LS
Sbjct: 517 GSCTYAHNWLSFWPFQLK----GFPVGFNAPSASLNVQIQKLRSLFAIGPGDNSAELSQG 572
Query: 567 ----YTGAVRHNSKVTRDSVGFCRGTII 638
+ GAV+ +T DSV F G ++
Sbjct: 573 VGQIHPGAVQQTLPITLDSVYFNGGNLM 600
>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
Length = 425
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 74 NNTNN*INGIFKKNHCFY 21
NN+N+ I+G FKKN C++
Sbjct: 169 NNSNDSISGNFKKNDCYW 186
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 101 THNSKPKFCNNTNN*IN-GIFKKNHCFYR 18
T +SKPKFC+ NN I+ G ++N+ R
Sbjct: 632 TDSSKPKFCSAVNNSISRGSLERNNLMER 660
>02_05_0897 +
32603060-32603387,32604348-32604589,32604681-32604824,
32604889-32605050,32605129-32605212,32605528-32605601,
32605850-32606039,32606120-32606275,32606368-32606465,
32606976-32607102,32607193-32607292,32607402-32607572,
32607790-32607838,32607912-32608003,32608705-32608774,
32608999-32609023,32609059-32609293,32609425-32609525,
32609614-32609865
Length = 899
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 221 PSTLEEPKPLHMWRRTELKRMELGEASVRRFQLARPHE*PQAG 349
P+ + P P W R+ LG S+ + +PHE P G
Sbjct: 677 PNGMRTPMPSRAWAPMSPPRLALGWQSMPGTPVPQPHEAPTPG 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,961,221
Number of Sequences: 37544
Number of extensions: 354283
Number of successful extensions: 1039
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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