Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k12f
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0720 + 20394898-20395284,20396062-20396202,20396304-203966...    29   2.4  
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566...    29   4.1  
08_02_1188 + 25053594-25054941,25055025-25055650                       28   7.2  
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737...    28   7.2  
12_01_0266 + 1936357-1936665                                           27   9.6  
10_08_0119 - 14952786-14953931,14954709-14954831                       27   9.6  
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665...    27   9.6  

>08_02_0720 +
           20394898-20395284,20396062-20396202,20396304-20396669,
           20397146-20397388,20397474-20397566,20397892-20398077,
           20398259-20398471
          Length = 542

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 100 LWLQLHQARAPSLWRSSLQDNLRNEVLPASGFLTQNSRTQLLVNLVFT 243
           +W +L    A ++W  +L   L  E L   G +T+  +  +  N + T
Sbjct: 386 MWTRLQPLYASNMWNEALNKRLGTEKLDLHGIITETGKRGMSFNQLLT 433


>11_01_0688 -
           5667539-5667655,5667792-5667953,5668084-5668179,
           5668278-5668339,5668434-5668509,5668612-5668694,
           5668807-5669132,5669741-5669787,5669900-5670036,
           5670135-5670168
          Length = 379

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 183 GVWISDTEFTYTIAGEPGIHMFNVQTLTSSVLVAGDLMAFLNTNNPI 323
           GV I D +  +TI G+P  H     T +   ++    +A +N   P+
Sbjct: 123 GVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPL 169


>08_02_1188 + 25053594-25054941,25055025-25055650
          Length = 657

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 315 NPILSADRAYILAPSEVQQVYRYSTTAKF--ALYNIATATSVDIANGQRLQLCIFGGGHS 488
           +P ++  RAY  AP E   +Y Y +      AL+   TA+   +    RL + + G    
Sbjct: 416 HPNVARLRAYYYAPDEKLLIYDYLSNGSLHSALHGGPTASPTPLPWSMRLSI-VQGAARG 474

Query: 489 LAYV 500
           LAY+
Sbjct: 475 LAYL 478


>01_06_1496 +
           37772838-37772935,37773039-37773243,37773649-37773742,
           37773830-37773933,37774370-37774618,37774706-37774819,
           37775010-37775093,37775292-37775462,37775544-37775657,
           37775751-37775894
          Length = 458

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 245 HVNTRFTSNCVREFCVR-NPDAGKTSLRKLSCNELLQSEG 129
           HV      N +++   R  P+AG   LRK  CN+L +  G
Sbjct: 97  HVIAEAGMNAIKDGYTRYTPNAGTLELRKAICNKLQEENG 136


>12_01_0266 + 1936357-1936665
          Length = 102

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 486 SVHRRRCITGDVGHSRCRRM 427
           +V RR C+  D GH  C RM
Sbjct: 58  NVMRRLCLQRDAGHEECERM 77


>10_08_0119 - 14952786-14953931,14954709-14954831
          Length = 422

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 394 PSSPCTI*LQRHPSTSRMANVSSYASSAVDTPSPMCLTTTFITYPRT 534
           P+SP  + L    +T+  A  ++  SS  D P P   TTT IT  RT
Sbjct: 45  PTSPSDVGLDAGMTTTTTAAAAALTSSVGDGPPPSRSTTT-ITAGRT 90


>02_02_0088 -
           6655493-6655601,6656057-6656259,6656382-6656594,
           6656683-6656792,6656878-6656981,6657076-6657245,
           6657337-6657501,6657584-6657702,6657853-6657940,
           6658035-6658140,6658235-6658323,6658461-6658604,
           6658715-6658807,6658906-6658972,6659116-6659228,
           6659306-6659401,6659524-6659724
          Length = 729

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 435 DIANGQRLQLCIFGGGHSLAYVLNNNVY 518
           D+ +GQ  QL ++  GHS+   +N   Y
Sbjct: 491 DLRSGQSPQLTVYSAGHSMQVFVNGKSY 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,014
Number of Sequences: 37544
Number of extensions: 416484
Number of successful extensions: 1120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)