Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k12f
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    35   0.057
Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    30   1.6  
Z81129-5|CAB03411.1|  779|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    29   2.1  
Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    28   6.5  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    28   6.5  
AF043698-4|AAB97560.1|  275|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF043698-3|AAK68268.1|  268|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 483 HSLAYVLNNNVYYL--PENRNQAIQLTNDGIPGVIYN--GHTDWVYEEDVMYTGXA 638
           +   YV N N+YY   PE  + AIQLT   + G  +N  G  +W+YEE+++    A
Sbjct: 213 NDFVYVHNYNLYYQKDPEKPDGAIQLT---VGGSTFNRFGLANWLYEEEILEASSA 265


>Z81129-6|CAB03412.1|  799|Caenorhabditis elegans Hypothetical
           protein T23F1.7b protein.
          Length = 799

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/96 (20%), Positives = 44/96 (45%)
 Frame = +3

Query: 333 DRAYILAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAYVLNNN 512
           +R   L P EV++++R  + ++   Y+I       +    +      G  +   +V +N 
Sbjct: 150 ERLNPLLPFEVEELFRELSDSRIT-YDIGLRKEESVIQAFKWN----GKFNDFVFVESNK 204

Query: 513 VYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDV 620
           +YY      + +   ++G    + +G  DW+YEE++
Sbjct: 205 IYYQSSPEEEGLTRVSNGGEHTV-DGLFDWIYEEEI 239


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 454 VSSYASSAVDTPSPMCLTTTFI-TYP--RTGIKLFNLRMTVSPESYTMDTPIGCTKRTLC 624
           V +YA    +T  P+CL T  + T P  R  IK++   + +  ++Y    PI    R   
Sbjct: 186 VLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFL 245

Query: 625 IP 630
           +P
Sbjct: 246 VP 247


>Z81129-5|CAB03411.1|  779|Caenorhabditis elegans Hypothetical
           protein T23F1.7a protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 474 GGGHSLAYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDV 620
           G  +   +V +N +YY      + +   ++G    + +G  DW+YEE++
Sbjct: 172 GKFNDFVFVESNKIYYQSSPEEEGLTRVSNGGEHTV-DGLFDWIYEEEI 219


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 454 VSSYASSAVDTPSPMCLTTTFI-TYP--RTGIKLFNLRMTVSPESYTMDTPIGCTKRTLC 624
           V +YA    +T  P+CL T  + T P  R  IK++   + +  ++Y    P+    R   
Sbjct: 186 VLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKTINRLFL 245

Query: 625 IP 630
           +P
Sbjct: 246 VP 247


>Z66560-2|CAE17736.1|  127|Caenorhabditis elegans Hypothetical
           protein D1053.4 protein.
          Length = 127

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -3

Query: 302 KCHKIASNKYTTCQSLYIEHVNT---RFTSNCVREFCVRNPDAGKTSLRKLSCNELLQSE 132
           +C+K   N +++CQ  Y   ++T         V++ C+   DA +T + K +    L+  
Sbjct: 32  RCNKEIGNSFSSCQGKYCYKMHTPDDTTVDGIVKKGCMNAADA-QTEVGKCT-RRPLEEG 89

Query: 131 GALA*CSCN 105
           GA   C CN
Sbjct: 90  GAELMCVCN 98


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 89  RVSRCGYNCIKPELLHSGGVRYRTIYATRFYR-RLDF*HRIHVHNCW 226
           +VS C  NC  P L H G +R +T   +R++R R+   H I +   W
Sbjct: 208 QVSFCRTNCSSPNLYHIGEMR-QTYNVSRYWRYRIAVWHGILLMFAW 253


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 373 TC*TSLGARM*ALSADRIGLLVFKNAIRSPATSTLLVKV-CTLN 245
           TC + L  +   LSA R G LVF N+++SP +   ++ + C  N
Sbjct: 339 TCLSLLDIKCPILSAPRNGELVFTNSVKSPYSLNSVISLKCDRN 382


>Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical
           protein F46B6.4 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 348 LAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQ--RLQLCI 470
           L+PS+ Q++YR      F  YNI  AT    A  +  R+Q+ I
Sbjct: 121 LSPSQQQELYRIFEVPIFDRYNIVLATFKQFAKTEEARIQIAI 163


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 363 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 524
           + Q+YRY+TT +  L  I T  +V    G  L + I  G  S A+     V+NNN   +L
Sbjct: 62  IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120

Query: 525 PENRN 539
           P  +N
Sbjct: 121 PTGQN 125


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 363 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 524
           + Q+YRY+TT +  L  I T  +V    G  L + I  G  S A+     V+NNN   +L
Sbjct: 62  IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120

Query: 525 PENRN 539
           P  +N
Sbjct: 121 PTGQN 125


>AF043698-4|AAB97560.1|  275|Caenorhabditis elegans Hypothetical
           protein C54G6.1a protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 LNTNNPILSADRAYILAPSEVQQVYR 380
           L T  PI+  D   + AP+E+QQ+ R
Sbjct: 204 LKTATPIIDFDAELLAAPAEIQQILR 229


>AF043698-3|AAK68268.1|  268|Caenorhabditis elegans Hypothetical
           protein C54G6.1b protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 LNTNNPILSADRAYILAPSEVQQVYR 380
           L T  PI+  D   + AP+E+QQ+ R
Sbjct: 197 LKTATPIIDFDAELLAAPAEIQQILR 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,966
Number of Sequences: 27780
Number of extensions: 355127
Number of successful extensions: 1075
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)