Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k12f
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.8  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 89  RVSRCGYNCIKPELLHSGGVRYRTIYATR 175
           +  +C Y+C+   +L+S    +  +Y  R
Sbjct: 18  KCEKCSYSCVNKSMLNSHLKSHSNVYQYR 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 152 YRTIYATRFYRRLDF*HRIHVHNC 223
           + + +  + ++RL   H +HVH C
Sbjct: 79  FESSFNAQSWQRLTSLHELHVHGC 102


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 211 VNSVSEIQT-PVKPRCVNCPVTNSSRVKELWLDAVVTTAANTHHHIPTIF 65
           V+S+S+    P+   C N P  N+  +   + +  V    +T     T+F
Sbjct: 148 VHSLSDYNDKPIPASCCNSPENNTCSISNSYTNGCVEALKDTVKLAGTVF 197


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 347 NVGSIS*QNWIVSIQKCHKIASNKYTTCQSLYIEHVNTR 231
           N  S S Q+ I+ +   HK  +  Y+   S  + +VNT+
Sbjct: 240 NDESFSLQDGILGMALSHKTQNLYYSAMSSHNLNYVNTK 278


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 97   PLWLQLHQARAPSLWRSSLQDNLRNEVLPASGFLTQNSRTQLLVN 231
            P WL+        ++   +     NEVL A     +N    LLVN
Sbjct: 997  PPWLEGVHVTPELIYEYQIHPKTLNEVLQADMNALKNFNQPLLVN 1041


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,962
Number of Sequences: 438
Number of extensions: 4648
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)