Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13k01r
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   7.3  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   KCVHNTDQEENTSMNFYDYHFNKTCIYR 84
           K +HN +   N + N Y+Y+ N    Y+
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYNNYK 115


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 294 PHLKNLNYHLIKTYDLPTSRVVLTVYFLGAILTV*RFFLIRHF--DRETIPYIL 139
           PH K L +HL K     T+  ++   F+   L      L+R F  + + IP  L
Sbjct: 355 PHQKKLRFHLAKERKASTTLGIIMSAFIVCWLPFFVLALVRPFLKNPDAIPAFL 408


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 149 RTFCLTSNTFRDLIDIVLNK 90
           +T  LT N  RD+ DI LN+
Sbjct: 174 QTLNLTENRLRDINDIGLNR 193


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 55  YHFNKTCIYRIILLSTMSIKSRNVFE 132
           Y+F+ T     IL + MSIK RN F+
Sbjct: 317 YYFSTTI--NPILYNLMSIKYRNAFK 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,661
Number of Sequences: 438
Number of extensions: 3025
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)