Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13j14f
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.2
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 1.6
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 2.1
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 26 4.9
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 4.9
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 8.6
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 8.6
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 8.6
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 25 8.6
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 211 YCFMCCYGFPGWIDGTVYKSHCK-LVHQFTSQCQWSGTNERSAERRTFYL*IWVERCLCR 387
YC C P + + CK ++++ C W+G + RTF L ++ L
Sbjct: 401 YCLKCFQVKP---PRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIP 457
Query: 388 VFLFTCLY 411
++ + Y
Sbjct: 458 IYFYVAFY 465
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 476 KSRLSALNESGQLIVFHLVTLVWGGDAILREGFIFTISQLWEGY 607
+ +L+ LN ++ H ++ + D++LR+ ISQLWE Y
Sbjct: 612 QGQLACLNPQ---VLSHCLSHLNSPDSLLRQWACLCISQLWENY 652
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/92 (26%), Positives = 37/92 (40%)
Frame = +2
Query: 335 PKGEPFTYESGWKDACAVFFYSLVCIVMHAILQEYFLDKISKKFHLSKSRLSALNESGQL 514
P G T S W+ VC VM+ +Q+YF + + +++ L ++E
Sbjct: 646 PPGLDATAYSSWEKGDNFVTKKNVCTVMNLWVQKYFFEDLK-----ARNTLYLISEMRTF 700
Query: 515 IVFHLVTLVWGGDAILREGFIFTISQLWEGYP 610
+ H+V G IL E I LW P
Sbjct: 701 LRDHVVPSFHIGSVILSE-----IDNLWTEEP 727
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 4.9
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +2
Query: 284 FISLHHNVSGVEPTREAPKGEPFTYES-GWKDACAVFFYSLVCIVMHAILQEYFLDKISK 460
FI+ +S + P E PK E GW C V + L I ++ + LD I+
Sbjct: 6 FINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDPINN 65
Query: 461 KFHLSKSRLSALNESG 508
L S S L +G
Sbjct: 66 FRVLDGSSASGLMITG 81
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 266 SPIASLFISLHHNVSGVEPTREAPKGEPFTYESGWKD 376
+P+ SL H SG+ P + G P + W D
Sbjct: 149 TPMVRALESLEHVFSGLYPESKRKMGLPVIFTRNWSD 185
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 53 KFLSEDFFRANNLYLLVSRLIPTKMGVKPAIGRKTNKNP 169
KFL E F + NL+ L + ++ G+ P + R T P
Sbjct: 175 KFLKEQFSKYANLFFLFTAVVQQIPGITP-VNRYTTIGP 212
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -3
Query: 595 KLRDGENETFPEYSITTPYQSYEMEYYK 512
+L DG++ T+P+ ++ P+ E +K
Sbjct: 553 RLADGQSSTYPKMPLSLPFNENAPEAFK 580
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Frame = +2
Query: 263 TSPIASLFISLH---HNVSGVEPTRE 331
++P S+F+ LH HN +G++PTRE
Sbjct: 176 SAPEGSIFL-LHACAHNPTGIDPTRE 200
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 174 MGGFLLVFRPIAGFTPIFVGIN 109
M GFL++F PI PIF +N
Sbjct: 502 MFGFLVMFSPIYPLAPIFSLVN 523
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 443 LDKISKKFHLSKSRLSALNESGQLIVFHLVTLV 541
LD+I+ +FH+ S AL S L+VF + ++
Sbjct: 69 LDQIADRFHIQNSTEKALILSIYLLVFAISPMI 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,606
Number of Sequences: 5004
Number of extensions: 58914
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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