Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13j09f
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 29 2.4
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 29 3.2
04_01_0044 + 489486-490012,490903-491332 29 3.2
05_03_0670 + 16819189-16819481,16821687-16821803,16822073-168221... 28 5.6
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099 28 7.4
02_05_1257 + 35286153-35286599,35286679-35287229,35287608-352878... 28 7.4
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 27 9.8
06_01_0938 - 7229953-7230882 27 9.8
06_01_0637 + 4635136-4635969 27 9.8
03_05_0718 - 27100882-27100929,27101197-27101303,27101446-271015... 27 9.8
02_05_1333 - 35761405-35761822,35762551-35763155 27 9.8
02_04_0522 - 23654012-23654611,23654761-23655081 27 9.8
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -2
Query: 630 PDGPSSLTPASICRRSAKQSSQVVQLRHLPKDTLVTRRSVRW----GSSLRSKWPERQPL 463
P+ PS+ P +C S +V R +DT ++V W G S+ + QP+
Sbjct: 570 PEAPSARAPLPVCL----SDSPIVARRMGSEDTKDMLKNVDWKTVGGGSVTTD--PSQPV 623
Query: 462 SRKRAERTIPQ*PQC 418
+KR + I Q P+C
Sbjct: 624 VKKRLPKKIRQVPEC 638
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 337 PHRPAQLLRKWTKTILCIRRQFCPMLS 417
P RPA+LLR +T I C+ C +L+
Sbjct: 153 PRRPAELLRAYTVEIACVSFLICFLLN 179
>04_01_0044 + 489486-490012,490903-491332
Length = 318
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 189 ELTLNTLVTPMSNALFMTCLSDFNACALSCKTEE 290
E+TL+ L +P L + C + N + SC TE+
Sbjct: 260 EITLDALCSPTCKGLCVGCGENLNTSSCSCNTEK 293
>05_03_0670 +
16819189-16819481,16821687-16821803,16822073-16822136,
16822566-16822724,16823014-16823165,16825137-16825272
Length = 306
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 399 VLSYAVYIAVIVVLFVQLAFGLVAASLAILNATKNPT-EPIFGLPGCLWANVLTALLGSI 575
++ +I ++ +LA A + +L + +F P WA VLT L GS+
Sbjct: 124 LIPIVTFIIAVIFRAEKLAIASCAGKMKVLGTVLSAKLAKVF--PSKYWATVLTCLSGSL 181
Query: 576 VLLIFGI 596
L+ G+
Sbjct: 182 QALVAGV 188
>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
Length = 575
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 270 LSCKTEENARIIEVEALAQGFRPTPACTAVTEVDQNDPLYPPPVL 404
+SC+ ++ + L+ GF P P A + D ++ L PP L
Sbjct: 342 ISCRDVHVHHLLHLFYLSVGFPPPPDAAAAPDDDPSEHLVPPSEL 386
>02_05_1257 +
35286153-35286599,35286679-35287229,35287608-35287872,
35288267-35288359,35288469-35288555,35288658-35288750
Length = 511
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 423 AVIVVLFVQLAFGLVAASLAILNATKNPTEPIF 521
AV+VVL LAFGL+A + ++ AT+N IF
Sbjct: 370 AVVVVLVQSLAFGLLA--MVLILATRNHFAVIF 400
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +3
Query: 306 EVEALAQGFRPTPACTAVTEVDQND-PLYPPPVLSYAVYIAVIVVLFVQLAFGLVAASLA 482
EV+ L ++P P C + E + D P + VV F + + +
Sbjct: 70 EVDELCDDWQPEPLCPPIKEGARIDTPTLESAAGPHTTVDGKEVVNFASANYLGLIGNEK 129
Query: 483 ILNATKNPTEPIFGLPGCLWANVLTALLGSIVLLIFGIYWLVSGLKDHLAISYIA 647
I+++ E +G+ C +GS +L +F I +++ K +LAI + A
Sbjct: 130 IIDSCVGSVEK-YGVGSC-GPRSFYGTIGSYLLWLFSIIYILWPQKKNLAILWFA 182
>06_01_0938 - 7229953-7230882
Length = 309
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 336 PTPACTAVTEVDQNDPLYPPPVLSYAVYIAVIVVLFVQLAFGLVAASLA 482
P C T + +DP PP L+ A +A+ VQ+ F +++A
Sbjct: 142 PVAVCLVATLLAAHDPEAVPPRLARAAGLALQGTWMVQMGFSFFTSAVA 190
>06_01_0637 + 4635136-4635969
Length = 277
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 397 GGGYKGSFWSTSVTAVQAGVGLNP*ANASTSIIL 296
GGGY G WS +T ++ G P SI L
Sbjct: 191 GGGYAGDIWSFGLTILELYTGSFPLVEQGQSIPL 224
>03_05_0718 -
27100882-27100929,27101197-27101303,27101446-27101593,
27102195-27102328,27102608-27102929
Length = 252
Score = 27.5 bits (58), Expect = 9.8
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Frame = +3
Query: 300 IIEVEALAQGFRPTPACTAVTEVDQNDPLYPPPVLSYAVYIAVIVVLFVQLAFGLVAASL 479
+ EV A A G P + ++ + +D L+P A+ AV+ + +A+ V+ ++
Sbjct: 76 VAEVSAAA-GVTPASSSSSPGGISVSDVLWPSAGAFLAM--AVLGRMDQMMAYKGVSLTI 132
Query: 480 AILNATKNPTEPIFGLPGCLWANVLTALLGS-----IVLLIFGIYWLVSGLKDHLAISYI 644
A L A + G P N+ A +G + L +FG WL G +I+++
Sbjct: 133 APLGAVCDVLFTAPGSPAAKKYNMFVAQIGCAAFGVLALSLFGPGWLARGAALSASIAFM 192
Query: 645 AL 650
+
Sbjct: 193 TI 194
>02_05_1333 - 35761405-35761822,35762551-35763155
Length = 340
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 189 ELTLNTLVTPMSNALFMTCLSDFNACALSCKTEE 290
E+TL+ L +P L + C + N + SC E+
Sbjct: 286 EITLDALCSPTCKGLCLGCGENLNTSSCSCNAEK 319
>02_04_0522 - 23654012-23654611,23654761-23655081
Length = 306
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 446 NEQYHNDRNVDSIGQNWRRIQRIVL 372
N + +DRN +S+ +W IQ+ VL
Sbjct: 85 NRDFESDRNANSLEHHWGNIQKEVL 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,349
Number of Sequences: 37544
Number of extensions: 418194
Number of successful extensions: 1250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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