Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13j09f
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81474-7|CAH60750.1|  305|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81045-3|CAB02817.3|  280|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone...    28   6.6  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    28   6.6  
U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone...    28   6.6  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    28   6.6  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    28   6.6  
AF273789-1|AAG15137.1|  333|Caenorhabditis elegans nuclear recep...    28   6.6  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    28   6.6  
Z73969-17|CAI79127.1|  111|Caenorhabditis elegans Hypothetical p...    27   8.7  
AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical
           protein T23D5.8 protein.
          Length = 216

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 122 CVNSNGRNTIKGQYDSLWTVHGRAHSKHTCHANVERFVHD 241
           C+   G+  +K Q +S WT     H  +  H  +E++  D
Sbjct: 140 CIGGVGKVLLKAQKESRWTTTNNLHISNLSHTGLEKYSPD 179


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = -1

Query: 256 KSDRQVMNKAFDIGVTSVFRVSSPVNSP*RIILSLDCISAVAVDTTQLSLEIATTVNNTD 77
           K+D+    K+ +   TS   VS+P  SP  +++++D       DT+  + + ++  ++ D
Sbjct: 487 KNDKPAAPKSTEEATTS--EVSAPTKSPAPVVVTIDASEGELGDTSTDAADSSSASSSDD 544

Query: 76  STLSRNAPK 50
             L ++A +
Sbjct: 545 DALRKDAAR 553


>Z81474-7|CAH60750.1|  305|Caenorhabditis elegans Hypothetical
           protein C18D4.5 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +3

Query: 393 PPVLSYAVYIAVIVVLFVQLAFGLVAASLAI----LNATKNPTEPIFGLPGCLWANVLTA 560
           P +L+  +YI+ IVV  V +  G++   + I    +N +++    +F L    +  ++  
Sbjct: 11  PTLLNQIIYISYIVVTIVFIVCGVLLLPIYIYVVKINKSRDKEIHLFALTTLFYGMIVQM 70

Query: 561 LLGSIVLLIFGIYWLVSGLKDHL 629
            L   +  IF I++LV   +D +
Sbjct: 71  YL---IATIFVIFYLVLNFEDDI 90


>U40419-8|AAA81428.3|  673|Caenorhabditis elegans Hypothetical
           protein C27F2.1 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 619 FKPDTSQYMPKISKTIEPSSAVKTFAQRHPGNPKIGSVGF 500
           +K DTSQ +PKI KT +      T    +P +  +  VGF
Sbjct: 509 YKSDTSQAIPKIYKTEKEKYGEVTVIAANPSDNTVLIVGF 548


>Z81045-3|CAB02817.3|  280|Caenorhabditis elegans Hypothetical
           protein C36F7.4a protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 506 GVLRCVQNGQRGSH*AESELNEQYHND-RNVDSIGQNWRRIQ 384
           GV RCV     G H ++  LN+  HN   N + I +  R IQ
Sbjct: 217 GVYRCVAKNDNGIHHSQVTLNQISHNHFTNSNLIPEELRAIQ 258


>U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform c protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 410 CCLHCGHCGIVRSARFRLSGCLSGHFERNEEPHRTDLRVTR 532
           C L     GI    R RL   LS H E+    H T  R+TR
Sbjct: 308 CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTR 348


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 410 CCLHCGHCGIVRSARFRLSGCLSGHFERNEEPHRTDLRVTR 532
           C L     GI    R RL   LS H E+    H T  R+TR
Sbjct: 441 CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTR 481


>U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform b protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 410 CCLHCGHCGIVRSARFRLSGCLSGHFERNEEPHRTDLRVTR 532
           C L     GI    R RL   LS H E+    H T  R+TR
Sbjct: 489 CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTR 529


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 410 CCLHCGHCGIVRSARFRLSGCLSGHFERNEEPHRTDLRVTR 532
           C L     GI    R RL   LS H E+    H T  R+TR
Sbjct: 438 CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTR 478


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 410 CCLHCGHCGIVRSARFRLSGCLSGHFERNEEPHRTDLRVTR 532
           C L     GI    R RL   LS H E+    H T  R+TR
Sbjct: 447 CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTR 487


>AF273789-1|AAG15137.1|  333|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 410 CCLHCGHCGIVRSARFRLSGCLSGHFERNEEPHRTDLRVTR 532
           C L     GI    R RL   LS H E+    H T  R+TR
Sbjct: 246 CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTR 286


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 410 CCLHCGHCGIVRSARFRLSGCLSGHFERNEEPHRTDLRVTR 532
           C L     GI    R RL   LS H E+    H T  R+TR
Sbjct: 440 CILSEAGQGICSRMRDRLLDALSAHIEKRYPYHTTSQRMTR 480


>Z73969-17|CAI79127.1|  111|Caenorhabditis elegans Hypothetical
           protein C12D8.18 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 383 FVSAASFVLCCLHCGHCGIVRSARFRLSGCLSGHF 487
           F+  + F+LC L    C IVR A  +  G  S ++
Sbjct: 37  FIMNSKFLLCVLAIAMCSIVREASAQYYGYASSYY 71


>AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical
           protein T19A6.4 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = +3

Query: 381 PLYPPPVLSYAVYIAVIVVLFV---QLAFG---LVAASLAILNATKNPTEPIFGLPGCLW 542
           P+YP  +L  A++ A     F+   +L      L+ ++++ L         +FG+P  + 
Sbjct: 56  PIYPLAMLGGALWCAANAFAFLIMNRLGLAVPILIWSTVSCLTGWATTRYGLFGVPKGIP 115

Query: 543 ANVLTALLGSIVLLIFGIYWLVSGLKDHLAI 635
           ++V+   +G IVL++   ++L   +K H+ I
Sbjct: 116 SSVILNYIGIIVLVVGSSFFLF--IKSHVYI 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,267,170
Number of Sequences: 27780
Number of extensions: 355788
Number of successful extensions: 1150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)