Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13j07f
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 64 2e-11
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.48
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 2.6
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 27 3.4
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 3.4
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 26 4.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.9
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.8
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 25 7.8
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 7.8
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 25 7.8
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 7.8
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 63.7 bits (148), Expect = 2e-11
Identities = 34/110 (30%), Positives = 62/110 (56%)
Frame = +2
Query: 164 INKMSFENNSNGNEKEERKYSHERNKSDELQLSRTDMNMLIMNYLVTEGFKEAALKFQQE 343
+ S + + +G+ + + ++ KS + + +D+N LI++YLV +G +EAA F +E
Sbjct: 2 VGTSSLDISMSGSSSSDAEQWEKQTKS--VHIDNSDVNSLILDYLVIQGDEEAAKTFAEE 59
Query: 344 AGLQEPALCSSLDERIMIREAVQGGRIPEAIAMVNSLHPELLDNDRYLYF 493
A + + + + ER+ I E ++ G I AI +N L PE+LD + L F
Sbjct: 60 AQITDYYIPPYVKERLEICELIKSGSINSAICKLNELEPEILDTNSELLF 109
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 0.48
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 247 RITTITD*HEHVNNELSSNRGLQRSSLE 330
R+ + + ++H+NNELSS+R ++ LE
Sbjct: 1012 RVALLLEENKHLNNELSSHRNAEKQHLE 1039
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/89 (23%), Positives = 37/89 (41%)
Frame = +2
Query: 185 NNSNGNEKEERKYSHERNKSDELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPA 364
N N + ERK + R +SD+ + + M+ V+EG A K + P
Sbjct: 107 NQKTRNAEGERKVAQRRVQSDKAEANDAAMSSSAPTVDVSEGNSAAEPKITPDDS-DTPR 165
Query: 365 LCSSLDERIMIREAVQGGRIPEAIAMVNS 451
L ++++I + EA + +NS
Sbjct: 166 LNVDMNDKINVDEAAAKSDSKLNVDQINS 194
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = -1
Query: 662 VRYVDQGRPVKPMTSLVQSEHWHHWHQPLRALHLQR 555
V+YV+ G+P+KPM S + +++ ++ Q + +L ++
Sbjct: 62 VKYVN-GKPLKPMKSEISTDYLNNAFQTIESLGAEK 96
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.4
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +2
Query: 146 RKYFTKINKM--SFENNSNGNEKEERKYSHERNKSDELQLSRTDMNMLIMNYLVTEGFKE 319
+K+ T +N+ + E N + ++ + +S +K E+ T +++ + +G E
Sbjct: 66 KKFHTSLNRFGKTLEKKFNFDLEDIKLHSSFESKKREID---TALSL----HFFRQGDVE 118
Query: 320 AALKFQQEAGLQEPALCSSLDERIMIREAVQGGR 421
A F +EAG++EP+ SL +++ VQG R
Sbjct: 119 LAHLFCKEAGIEEPS--ESLHVFTLLKSIVQGIR 150
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.5
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 131 HANFSRKYFTKINKMSFENNSNGNEKEERKYSHERNKSDELQLSRTDMNMLIMNYLVTEG 310
H+N S Y+T N MSF ++N N Y N EL + + + I N + G
Sbjct: 223 HSNVSNGYYTSRNIMSFLLSNNTNTS---SYPFSVN-GVELDVWNENAGVFINN--IYFG 276
Query: 311 FK-EAALKFQQEAGLQEPALCSS 376
F A+KF+ E + + L +S
Sbjct: 277 FSLSDAMKFENETFIAKKILENS 299
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +2
Query: 206 KEERKYSHERNKSDELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQ 355
++++K H N + +++ +N I +YL+ + + EAA F +EA +Q
Sbjct: 23 QKDQKQPHVNNAD---RTTQSLLNSYIYDYLIKKDYCEAARAFGREAQVQ 69
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 111 FFLCYVLQILQFSCNAKKSQKLNYVCMHLIFDINDMT 1
+ L ++L IL CN+ C++L F + D T
Sbjct: 249 YALSFILMILSHICNSLDDSLYRLFCIYLRFSMIDPT 285
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 272 MNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDERIMIREAVQGGRIPEAIAMVNS 451
M+M ++ + + E F F E P L + +I+ GRIP ++ +
Sbjct: 1 MDMKVVPWRLKEDFLYLMSCFYNEGQEGIPDLAALFRGVEIIQAWSTRGRIPHSVESTSQ 60
Query: 452 LHPELLDNDR 481
L L+ NDR
Sbjct: 61 LVSSLISNDR 70
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 275 NMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDER 388
N++I+ L E F + KFQ E+ L + A C++ R
Sbjct: 176 NLVILRNLKLEVFLLSLSKFQVESPLAKDATCAAWSRR 213
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 104 RKN*GLFRIHANFSRKYFTKINKMSFENNSNGNEKEERKYSHERNKSDELQLS 262
RK G +H N S K+ + N+ + +K +SH+ DEL ++
Sbjct: 178 RKTRGSRNLHLNESGKFIEEANQARRQARLEDLKKRIALHSHKAGIEDELDIT 230
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 68 LQEN*SICNT*QRKN*GLFRIHANFSR-KYFTKINKMSFENNSNGNEKEERKYSHERNKS 244
+Q N ++ Q K L++ A + + F + + E N N+K+ + + + N S
Sbjct: 175 MQNNVNLTGAEQEKGLDLYKNSATANNDEIFYNLESLRREGYLNSNKKQSQSPNGDYNSS 234
Query: 245 DELQLSRT 268
DE ++T
Sbjct: 235 DESCSNKT 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,609
Number of Sequences: 5004
Number of extensions: 47811
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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