Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13j07f
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710...    94   1e-19
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056...    52   6e-07
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731...    29   4.6  
01_01_1181 + 9410310-9411329                                           28   8.0  

>03_02_0286 +
           7100342-7100504,7100613-7100719,7102109-7102240,
           7102383-7102539,7103099-7103220
          Length = 226

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 49/147 (33%), Positives = 78/147 (53%)
 Frame = +2

Query: 239 KSDELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDERIMIREAVQGG 418
           K  ++++ + DMN L+MN+LVTEGF +AA KF+ E+G Q     +++ +R+ ++ AVQ G
Sbjct: 16  KLRDVKIRKEDMNRLVMNFLVTEGFVDAADKFRVESGTQPDIDLATITDRMEVKRAVQSG 75

Query: 419 RIPEAIAMVNSLHPELLDNDRYLYFHXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXNDA 598
            + EAI  +N L+P +LD +  LYFH         I                      + 
Sbjct: 76  NVQEAIEKINDLNPTILDTNPQLYFHLQQQKLIELIRAGKINEALEFAQEELAPRGEENQ 135

Query: 599 NALTELERSLALLAFPDPHTSPFADLL 679
             L E+E+++ALL F D    P+ +LL
Sbjct: 136 VFLEEIEKTVALLVFEDIKNCPYGELL 162


>01_06_0895 -
           32804433-32804744,32804948-32805163,32805301-32805642,
           32805778-32806020,32806130-32806582,32806898-32807113,
           32808360-32808432,32808750-32808790,32809027-32809118,
           32809222-32809333,32810003-32810078,32810154-32810301,
           32811195-32811336,32812120-32812196,32813568-32813619
          Length = 864

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 1/160 (0%)
 Frame = +2

Query: 209 EERKYSHERNKSDELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPA-LCSSLDE 385
           ++ +Y H+ + SD       D+  ++++YL+   FKE A  F    GL+ P      +D+
Sbjct: 35  QKNRYFHDESVSDN------DVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDK 88

Query: 386 RIMIREAVQGGRIPEAIAMVNSLHPELLDNDRYLYFHXXXXXXXXXIXXXXXXXXXXXXX 565
           R  I   V  G   +AI +   L P LL+ND  L+F          +             
Sbjct: 89  RKAIFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELV-RSRKCTEALEFG 147

Query: 566 XXXXXXXXNDANALTELERSLALLAFPDPHTSPFADLLLP 685
                        + +LE  +ALLA+ +P  SP   LL P
Sbjct: 148 QKKLTPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSP 187


>07_03_0011 +
           12370624-12370684,12372573-12372718,12372793-12373129,
           12374323-12374452,12375346-12375406,12375572-12375618,
           12376873-12376950,12377195-12377345,12377495-12377558,
           12377735-12377893,12378007-12378128,12378952-12378981,
           12379050-12379124,12379563-12379644,12379809-12379938,
           12381417-12382164,12382833-12383054,12383127-12383276,
           12384851-12384904,12384985-12385058,12386130-12386204,
           12386365-12386584
          Length = 1071

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 257 LSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSL 379
           ++  ++N LI  YL   GF  AA     EAG+ +  +  +L
Sbjct: 4   ITSAELNFLIFRYLQESGFIHAAFTLGYEAGIHKGGIDGNL 44


>01_01_1181 + 9410310-9411329
          Length = 339

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 161 KINKMSFENNSNGNEKEER-KYSHERNKSDEL 253
           K+NKMSF+   N N K ++   S E  K D++
Sbjct: 210 KVNKMSFKKKGNQNSKSKKGSTSGEYGKQDQV 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,306
Number of Sequences: 37544
Number of extensions: 281134
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)