Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13j05f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    36   3e-04
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.61 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.81 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   1.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   1.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 183 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 326
           +RIVGG+       P +AG+      G   ICGA++++    +TAAHC
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGM--ICGATIISKRYVLTAAHC 204


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 261  HSSVRSQVQQDGGEHQRLRQNHPQSWYRRSQR 166
            HSS ++Q QQ   + Q+ +Q  PQ   ++ Q+
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQ 1526



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 404 PGAS---GEDVSCAKSEGELTSLGSPG 333
           PG S   GE  S A ++G  T+  SPG
Sbjct: 893 PGCSSKNGEPTSAAFAQGFATAASSPG 919


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 233 CWTCDRTDEWQNFH 274
           CW CD+ +E++  H
Sbjct: 467 CWVCDQCEEYEYVH 480


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 627 LGVFVGCWLP 598
           +GVFV CWLP
Sbjct: 333 MGVFVVCWLP 342


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 627 LGVFVGCWLP 598
           +GVFV CWLP
Sbjct: 333 MGVFVVCWLP 342


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 627 LGVFVGCWLP 598
           +GVFV CWLP
Sbjct: 333 MGVFVVCWLP 342


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 627 LGVFVGCWLP 598
           LGVF+ CWLP
Sbjct: 625 LGVFLICWLP 634


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 627 LGVFVGCWLP 598
           +GVF+ CWLP
Sbjct: 341 MGVFIICWLP 350


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 88  QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLT 225
           Q+S S+      S +  PR L A     TST P        TLVL+
Sbjct: 810 QQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLS 855


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 212 VCGRTTHNPGTVEVSGFLGASKTLGPGDTDLD 117
           VCGR   N  TV  +  L    ++G GDT  D
Sbjct: 125 VCGRFYGNIQTVXNNWLLLEGHSIGIGDTIAD 156


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 494 LHQQHPAHQPSQWKQQ 541
           +H QHP  QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 233 CWTCDRTDEWQ 265
           CW CD+ +E++
Sbjct: 557 CWVCDQCEEYE 567


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 627 LGVFVGCWLP 598
           +G FV CWLP
Sbjct: 312 VGGFVACWLP 321


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 324 CWRTRRAQARQFTLALGTANI 386
           CW TR+    Q    +GT+N+
Sbjct: 459 CWDTRKEYIPQNLGVIGTSNL 479


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 182 TVEVSGFLGASKTLGPGDTDLDVVV 108
           T +V G +GA   +G  D D D ++
Sbjct: 108 TGDVHGVIGAGHWIGDHDVDKDELI 132


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 627 LGVFVGCWLP 598
           +GVF+ CW+P
Sbjct: 278 MGVFLICWVP 287


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 435 SYNMDTLHNDVAIINHNHVGFTNN 506
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 435 SYNMDTLHNDVAIINHNHVGFTNN 506
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 355  SSPSLLAQLTSSPEAPGSPPPMSR 426
            S PS    + ++ EAP  PP   R
Sbjct: 961  SDPSDTVTIITAEEAPSGPPTSIR 984


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,749
Number of Sequences: 438
Number of extensions: 2965
Number of successful extensions: 23
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)