Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13j02f
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   1.2  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.7  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   4.8  
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    25   6.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   6.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   6.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 205 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 294
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 43  MISTVLSAVECVLFQ*NVFTRERFSVCLVSTIS 141
           MIS  + A+  ++ +  VF  E F V L+ST++
Sbjct: 840 MISATIIAISSIVMEYKVFISEPFLVQLISTLN 872


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 501 DLFGSILADIKAKLESLAVTLVLNERRV*AIPVTGLSKLSAVTVL*RC 358
           D  G I+ + K K  +  V   LN+ R+  +  TG + L+++ V  RC
Sbjct: 843 DFCGFIVFENKLKSTTATVIRELNDARIRTVMCTGDNVLTSICVGKRC 890


>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 205 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 327
           GDF  +  +FS   E     + ++EE M     E MN++S+
Sbjct: 31  GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -2

Query: 215 EKSPSLMGIFLLRPLSAIFHVICRVEIVETKQTLKRSRVNTFHWNNTHSTADKTVLIISR 36
           +KS  ++G F     S++  V     I+E+  +L R   N+F +NN  S + +   +I+ 
Sbjct: 30  QKSSKIVGSFTNSQNSSVGSV--HSPILESPTSLNRQHRNSFSFNNVSSPSLEDERLINF 87

Query: 35  P 33
           P
Sbjct: 88  P 88


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 409 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 525
           +S+ SP +  EG   +LK R   +  TP+  +  T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 186  KYPHQAWRFFGYRY 227
            +YP  AW+FF  RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 593 SLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSGV 486
           S++ S  T  +S  SS    +S+  S+ +TTISSG+
Sbjct: 529 SIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGI 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,443
Number of Sequences: 5004
Number of extensions: 39311
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)