Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13i20f
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0189 + 15165485-15168694                                         27   8.1  
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174...    27   8.1  

>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 418  FYESKIRLNGRKIMKKSAAVKLGDEVDVVKMISP 519
            +YESK+ L+ RK++K+    K  DE +  + ++P
Sbjct: 920  YYESKLNLSWRKVLKEVMNNKESDENNRWEFLNP 953


>04_01_0150 +
           1741639-1741742,1742432-1742543,1742856-1743594,
           1743724-1743776,1743914-1743991,1744107-1744405,
           1744660-1745476,1745576-1745842,1745987-1746181,
           1746287-1746372,1746469-1746657,1747138-1747207,
           1747399-1747552,1747706-1747832,1749158-1749254
          Length = 1128

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 55  IVHINKSVMSLIRRLTPILNCRYLRREVCNRSIHTVILKEANINSTSTLLNLQPVQPVF 231
           IVH+ K     +R L P+ N   LRR    + I  ++L   N   ++    +Q + P+F
Sbjct: 354 IVHVPKLTEEQLRSL-PVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVRKGMQNIFPIF 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,513,440
Number of Sequences: 37544
Number of extensions: 194432
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)