Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13i20f
         (575 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4208|AAF56768.1|  189|Drosophila melanogaster CG4884-PA...    94   1e-19

>AE014297-4208|AAF56768.1|  189|Drosophila melanogaster CG4884-PA
           protein.
          Length = 189

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 3/144 (2%)
 Frame = +1

Query: 145 RSIHTVILKEANINSTSTLLNLQ-PVQPVFSIER--GKSKKAKYDSDDEDEAFGEXXXXX 315
           RS+ T    ++ +   ST L LQ PV    S  +   KS +A  D D +DE   +     
Sbjct: 13  RSLRTPFPSKS-LPKLSTTLELQAPVHTSASAWKYDKKSSRASDDLDSDDE--DDEDFKD 69

Query: 316 XXXXXXXXXXTTSMRTDVIIKSALGYARNRVEEIFYESKIRLNGRKIMKKSAAVKLGDEV 495
                       S+R D+++K+ LG ARN+VE  FYESKIR+NG+K+ KKSA +++GDE+
Sbjct: 70  ERDSKVVKTKVNSLRADLLLKAGLGMARNKVELNFYESKIRVNGKKLPKKSAQLEVGDEI 129

Query: 496 DVVKMISPKNPEHLYVSXIEILNI 567
           DV++  S  NP HL V+ + IL++
Sbjct: 130 DVIRGFSQSNPSHLVVARVSILSV 153


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,479,675
Number of Sequences: 53049
Number of extensions: 365393
Number of successful extensions: 879
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)