Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13i20f
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical ...    29   1.8  
AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    29   3.1  
AF039053-15|AAW88408.1|  279|Caenorhabditis elegans Serpentine r...    27   7.2  
AC024201-19|AAF36013.1|  224|Caenorhabditis elegans Hypothetical...    27   7.2  
AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC199160-1|ABO33281.1|  302|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC025715-4|AAP13754.1|  301|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical
           protein F33E11.6a protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 169 KEANINSTSTLLNLQPVQPVFSIERGKSKKAKYDSDDED 285
           +E  + +    LN  P   +  I++G+   A YDSDDE+
Sbjct: 296 REEAMRAREATLNTTPQSSMAQIKQGRKLIAAYDSDDEE 334


>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 186 VNVCFF*YYSVYASITYFSS*VSTIQYWC 100
           +N+CF+ Y++ Y +I Y  + +STI   C
Sbjct: 167 LNLCFYQYWTTYKTIVYILTFLSTIVLTC 195


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -3

Query: 258 LFRFSSFNTEYRLNRLKV*QCRS*VNVCFF*YYSVYASITYFSS*VSTI 112
           LF+F  +  +   N  KV  C   VN CF+ +++++ SI +FS  V +I
Sbjct: 144 LFKFCDYKLDIPSN-CKVFGCA--VNSCFYSFWTIHKSIIFFSILVFSI 189


>AF039053-15|AAW88408.1|  279|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 17 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 186 VNVCFF*YYSVYASITYFSS*VSTI 112
           +N CF  YYS+   ITY S+   T+
Sbjct: 162 INACFTKYYSINKGITYISTFTFTL 186


>AC024201-19|AAF36013.1|  224|Caenorhabditis elegans Hypothetical
           protein Y71F9B.15 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 306 VILSKCFIFIVRIILCLFRFSSFNTEYRLNRLKV 205
           V+L KC +F+V ++ C  +      E    RLK+
Sbjct: 2   VLLPKCLVFLVFLVTCNGQMLKLTEEQNEKRLKI 35


>AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical
           protein ZC190.6 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 486 TKFYSCTFFHYFPAI*SYFTFIKYFL 409
           +++Y  TF HYF  I S FT    FL
Sbjct: 471 SRYYQMTFSHYFENITSVFTICVPFL 496


>AC199160-1|ABO33281.1|  302|Caenorhabditis elegans Hypothetical
           protein CE7X_3.1 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 233 VLKEENLKRQSMILTMKMKHLERMTRHCQRI 325
           +LK  +++ Q  I+  K++HLE    H +RI
Sbjct: 8   ILKVFDIQEQEQIVMKKIRHLENSDLHFERI 38


>AC025715-4|AAP13754.1|  301|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.13 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 233 VLKEENLKRQSMILTMKMKHLERMTRHCQRI 325
           +LK  +++ Q  I+  K++HLE    H +RI
Sbjct: 8   ILKVFDIQEQEQIVMKKIRHLENSDLHFERI 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,166
Number of Sequences: 27780
Number of extensions: 206673
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)