Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13i09f
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 31 1.0
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 1.8
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 1.8
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 3.2
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 29 4.2
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653... 28 5.5
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 7.3
02_02_0102 + 6790271-6790366,6790493-6790588,6791794-6791878,679... 28 7.3
07_03_0614 - 19974200-19975426 27 9.7
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 530 RLPSDTLPP*TVVPH-PSRSTKIPWGITTPCWIIAPAGC 417
+LPS +LPP PH P ST + T+PC P C
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSC 44
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 563 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 444
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 123 SIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAVS 302
S+P + K S+ S + SNS F + ++P S + ++ LHT +SL VS
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459
Query: 303 PV 308
V
Sbjct: 460 SV 461
>11_06_0500 +
24362627-24362828,24363046-24363704,24364958-24365300,
24366227-24366645
Length = 540
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 491 PHPSRSTKIPWGITTPCWIIAPAGCLGRSGWHVLLVRCSHPCRN 360
P PS S ++ + T +P G G GW L+ SHPC +
Sbjct: 47 PTPSSSDEL--SLATGARTDSPNGMGGSFGWLEFLLSTSHPCED 88
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 477 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 575
SAR R I +PP R HC+++R+++G
Sbjct: 86 SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118
>02_02_0102 +
6790271-6790366,6790493-6790588,6791794-6791878,
6792263-6792384,6792491-6792515,6792795-6792824,
6793123-6793187,6793710-6793757,6793816-6793848
Length = 199
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 440 WIIAPAGCLGRSGWHVLLVRCS 375
WII PAG LG S W ++ + S
Sbjct: 86 WIILPAGYLGSSFWGMVFILAS 107
>07_03_0614 - 19974200-19975426
Length = 408
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -2
Query: 491 PHPSRSTKIPWGITTPCWIIAPAGCLGRSGW 399
P P +T PWG+ C P G GW
Sbjct: 375 PDPEATTSEPWGLRFACASDHPLPAPGSCGW 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,558,187
Number of Sequences: 37544
Number of extensions: 450281
Number of successful extensions: 1121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -