Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13i08f
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    78   1e-15
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.6  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   8.8  

>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
 Frame = +1

Query: 307 DKEGYTSFWNDCISSXXXXXXXXXXXXXXXXXXXXXXXXXKGLLSRKVI-VKSDTLTGDV 483
           DK+GY SFWND IS                          +  L+ +V+ +  + LTG+V
Sbjct: 73  DKQGYLSFWNDSISYSLRGCILMELAFRGKLRMQKDVNRKRFPLADRVVELVDEKLTGEV 132

Query: 484 LLDEALKHMKDTDPPETVQSWIEYLSGETWNPMKLKYQLKNVRER 618
           LLDEA+K M  T    +V SWI+ +SGETWN MK+ YQL+ VRER
Sbjct: 133 LLDEAIK-MIHTSELMSVTSWIDLMSGETWNVMKIGYQLRQVRER 176


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -2

Query: 594 VFQFHWI-PCFTTQIFNPALYC---FWRVSIFHMF 502
           +F+ H + P F  QIF   L+C   +W  S+F MF
Sbjct: 192 LFKEHAVAPFFVFQIFCCVLWCLDDYWYFSLFSMF 226


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 619 IFRVRSLTGISVSLDSMFHH 560
           IF    +TGI +++DS+F+H
Sbjct: 219 IFVALLITGICITVDSLFYH 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,603
Number of Sequences: 5004
Number of extensions: 33870
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)