Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13i03f
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.024
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect(2) = 0.024
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = -1

Query: 474 HRRVAHMTDHVSCGPKHEHENVDHDLHRH 388
           H  + H   H+   P H H +     H+H
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPHHQH 444



 Score = 23.4 bits (48), Expect(2) = 0.024
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 411 VDHDLHRHPHQPRT 370
           + H  H HPH P T
Sbjct: 459 IGHTPHHHPHPPET 472


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 122 FCLGMCSIEKGRLVYIVYK 66
           FC+G+CS ++ RLV  +++
Sbjct: 18  FCVGLCSEDEERLVRDLFR 36


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/71 (18%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = +1

Query: 289 VILTHCVTLFLTAIMLVGTLREK--PHLMRPWLVWMSVQIMIYVLMFVFWTTTNMVSHMG 462
           +++  C+TLF   ++++  +RE+    +   ++V ++V  ++  ++ + +    +V+  G
Sbjct: 193 LVIVPCLTLFGNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMPFAVYVLVN--G 250

Query: 463 DTSMLGYALEF 495
             S+ G+  +F
Sbjct: 251 SWSLPGFVCDF 261


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 89  RLVYIVYKRIGTKFMKKYFV 30
           R  Y+ YK  G  FM  YF+
Sbjct: 44  RFPYLCYKNGGGAFMVPYFI 63


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 89  RLVYIVYKRIGTKFMKKYFV 30
           R  Y+ YK  G  FM  YF+
Sbjct: 97  RFPYLCYKNGGGAFMVPYFI 116


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 15/68 (22%), Positives = 27/68 (39%)
 Frame = -1

Query: 468 RVAHMTDHVSCGPKHEHENVDHDLHRHPHQPRTHQVRFFPQSADKHDGCQEQRDAMCQND 289
           R+  +   +    K   ++V+ D  + PHQ   H     PQ+  +    Q+Q+    Q  
Sbjct: 783 RIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQ 842

Query: 288 SCQNAIRQ 265
             Q   +Q
Sbjct: 843 QQQQQQQQ 850


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 483 VSEHRRVAHMTDHVSCGPKHEHENVDHDLHRHPH 382
           V   + V      V  GPKH+H+     + ++ H
Sbjct: 524 VHSEQNVPGAVVRVFLGPKHDHQGRPISISKNQH 557


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 277 VLATVILTHCVTLFLTAIMLVGTLREKPHLMRPWLVWMSVQIMIYVLMFVFWTT 438
           VL T+IL          ++ V     + H+M PW+  + + ++  +L+   + T
Sbjct: 307 VLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHVLPRLLVMRRYNT 360


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 294 FDTLRHAVPDSHHACRH 344
           +  LR   P++HH  RH
Sbjct: 70  YPLLRFENPETHHPIRH 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,753
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)