Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13h16f
(613 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b... 122 8e-28
BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+ transp... 122 1e-27
BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+ transp... 122 1e-27
AY871272-1|AAX11428.1| 256|Homo sapiens cell proliferation-indu... 122 1e-27
AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+ transp... 122 1e-27
AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+ transp... 122 1e-27
BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+ transp... 119 7e-27
AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+ transp... 84 3e-16
BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein. 33 1.0
BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein. 33 1.0
BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48 rece... 33 1.0
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250... 33 1.0
AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein... 33 1.0
AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48 rece... 33 1.0
AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48 rece... 33 1.0
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ... 33 1.0
AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc... 33 1.0
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 7.4
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 7.4
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 7.4
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 7.4
AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens ... 30 7.4
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 7.4
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 7.4
AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane hel... 30 7.4
BC126449-1|AAI26450.1| 360|Homo sapiens LSM11, U7 small nuclear... 29 9.8
BC051353-1|AAH51353.1| 353|Homo sapiens LSM11 protein protein. 29 9.8
AK095592-1|BAC04581.1| 360|Homo sapiens protein ( Homo sapiens ... 29 9.8
>X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b
protein.
Length = 256
Score = 122 bits (295), Expect = 8e-28
Identities = 76/193 (39%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Frame = +2
Query: 56 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 217
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 218 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 394
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 395 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 575 AAYREXLMYAYSE 613
YRE L Y E
Sbjct: 180 VTYRERLYRVYKE 192
>BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 122 bits (294), Expect = 1e-27
Identities = 76/193 (39%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Frame = +2
Query: 56 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 217
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 218 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 394
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 395 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 575 AAYREXLMYAYSE 613
YRE L Y E
Sbjct: 180 VTYRERLYRVYKE 192
>BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 122 bits (294), Expect = 1e-27
Identities = 76/193 (39%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Frame = +2
Query: 56 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 217
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 218 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 394
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 395 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 575 AAYREXLMYAYSE 613
YRE L Y E
Sbjct: 180 VTYRERLYRVYKE 192
>AY871272-1|AAX11428.1| 256|Homo sapiens cell
proliferation-inducing protein 47 protein.
Length = 256
Score = 122 bits (294), Expect = 1e-27
Identities = 76/193 (39%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Frame = +2
Query: 56 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 217
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 218 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 394
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 395 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 575 AAYREXLMYAYSE 613
YRE L Y E
Sbjct: 180 VTYRERLYRVYKE 192
>AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 122 bits (294), Expect = 1e-27
Identities = 76/193 (39%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Frame = +2
Query: 56 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 217
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 218 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 394
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 395 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 575 AAYREXLMYAYSE 613
YRE L Y E
Sbjct: 180 VTYRERLYRVYKE 192
>AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit b
isoform 1 pr protein.
Length = 256
Score = 122 bits (294), Expect = 1e-27
Identities = 76/193 (39%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Frame = +2
Query: 56 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 217
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 218 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 394
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 395 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 575 AAYREXLMYAYSE 613
YRE L Y E
Sbjct: 180 VTYRERLYRVYKE 192
>BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 119 bits (287), Expect = 7e-27
Identities = 75/193 (38%), Positives = 105/193 (54%), Gaps = 7/193 (3%)
Frame = +2
Query: 56 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 217
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 218 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 394
EE+FQF + KTGVTGPY G GL Y SK IYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKGIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 395 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 575 AAYREXLMYAYSE 613
YRE L Y E
Sbjct: 180 VTYRERLYRVYKE 192
>AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 195
Score = 84.2 bits (199), Expect = 3e-16
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +2
Query: 242 SKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPKLAAWLDKE 418
S GPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP +A + DK
Sbjct: 8 SAAATAGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPFVADFADKL 66
Query: 419 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYREXLM 598
E + E + +++ +++AI+ EK++Q Q + L ++ N+ + LE YRE L
Sbjct: 67 NEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLY 126
Query: 599 YAYSE 613
Y E
Sbjct: 127 RVYKE 131
>BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein.
Length = 913
Score = 32.7 bits (71), Expect = 1.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 410 DKEVEATENEWNEGRNQTVKALEDAIEGEKTE-QWRAQGQELLIQAKKENVLLQLEAAYR 586
D ++EA N WN G + K +E EK + Q + I +K N + +L+ YR
Sbjct: 201 DSDIEARLNSWNLGLDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYR 260
>BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein.
Length = 626
Score = 32.7 bits (71), Expect = 1.0
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +2
Query: 185 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 364
E + G + EW HS T GP G +E E E L+L
Sbjct: 67 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 126
Query: 365 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 529
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 127 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 186
Query: 530 LLIQAK--KENVLLQLEAAYREXL 595
L +A+ +E+ L ++ A E L
Sbjct: 187 LAAEAEGDRESELSEVPEAGGEGL 210
>BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.7 bits (71), Expect = 1.0
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +2
Query: 185 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 364
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 365 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 529
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 530 LLIQAK--KENVLLQLEAAYREXL 595
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.0
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +2
Query: 404 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein
B48 receptor type 2 protein.
Length = 1076
Score = 32.7 bits (71), Expect = 1.0
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +2
Query: 185 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 364
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 365 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 529
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 530 LLIQAK--KENVLLQLEAAYREXL 595
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.7 bits (71), Expect = 1.0
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +2
Query: 185 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 364
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 365 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 529
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 530 LLIQAK--KENVLLQLEAAYREXL 595
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 32.7 bits (71), Expect = 1.0
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Frame = +2
Query: 185 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 364
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 365 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 529
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 530 LLIQAK--KENVLLQLEAAYREXL 595
L +A+ +E+ L ++ A E L
Sbjct: 649 LAAEAEGDRESELSEVPEAGGEGL 672
>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
protein 1 protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.0
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +2
Query: 404 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome associated
protein protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.0
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +2
Query: 404 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 574
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 7.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 446 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 270
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 269 CKDPSHQ 249
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 7.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 446 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 270
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 269 CKDPSHQ 249
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 7.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 446 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 270
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 269 CKDPSHQ 249
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 7.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 446 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 270
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 269 CKDPSHQ 249
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AK128829-1|BAC87629.1| 385|Homo sapiens protein ( Homo sapiens
cDNA FLJ46309 fis, clone TESTI4039744. ).
Length = 385
Score = 29.9 bits (64), Expect = 7.4
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +1
Query: 409 GQGXXXXXXXXXXXXXPNRESTGGRNRGREDGAVARAGTGAPH--PGQEGERAP-AARGR 579
G+G P+ GGR R G GAPH G G+R P RGR
Sbjct: 94 GRGAPHLPGGAAGQRRPSPPRRGGRAEAPLTSQAGRPGRGAPHLPDGAAGQRLPQPPRGR 153
Query: 580 LQGE 591
G+
Sbjct: 154 AAGQ 157
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 7.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 446 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 270
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 269 CKDPSHQ 249
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 7.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 446 RSIRSRSLQLPCPTKQPILVRISRE-PHTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQK 270
RS R R + P P ++ VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 269 CKDPSHQ 249
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AB065557-1|BAC45258.1| 542|Homo sapiens seven transmembrane helix
receptor protein.
Length = 542
Score = 29.9 bits (64), Expect = 7.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 457 PNRESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQ 585
P+ +TGGR GR+ G A G + GE ARGR Q
Sbjct: 33 PDEATTGGRAAGRQGGRAAGWQGGKAAGRRGGEARGGARGRGQ 75
>BC126449-1|AAI26450.1| 360|Homo sapiens LSM11, U7 small nuclear
RNA associated protein.
Length = 360
Score = 29.5 bits (63), Expect = 9.8
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 475 GGRNRGREDGAVARAGT-GAPHPGQEGERAPAA 570
GGR RGR GA A +G AP P R P A
Sbjct: 70 GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDA 102
>BC051353-1|AAH51353.1| 353|Homo sapiens LSM11 protein protein.
Length = 353
Score = 29.5 bits (63), Expect = 9.8
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 475 GGRNRGREDGAVARAGT-GAPHPGQEGERAPAA 570
GGR RGR GA A +G AP P R P A
Sbjct: 63 GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDA 95
>AK095592-1|BAC04581.1| 360|Homo sapiens protein ( Homo sapiens
cDNA FLJ38273 fis, clone FCBBF3003305. ).
Length = 360
Score = 29.5 bits (63), Expect = 9.8
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 475 GGRNRGREDGAVARAGT-GAPHPGQEGERAPAA 570
GGR RGR GA A +G AP P R P A
Sbjct: 70 GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDA 102
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,518,181
Number of Sequences: 237096
Number of extensions: 2129382
Number of successful extensions: 9341
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 8940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9333
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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