Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13h10r
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   2.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.6  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 541 VAVCLDTVCL*PDELEWNLY*IQNLMVKSVTTSLPRTDPI 660
           + VC+  + L  DEL+  L+ +Q++ +K + T+    D I
Sbjct: 10  ICVCVSAMTL--DELKSGLHTVQSVCMKEIGTAQQIIDDI 47


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 431 VFSHVL*NLFASNQPGLRFESPEY 360
           VF H+L  L    +P  +FE+  Y
Sbjct: 348 VFIHILPRLLVMRRPQYKFETNRY 371


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 431 VFSHVL*NLFASNQPGLRFESPEY 360
           VF H+L  L    +P  +FE+  Y
Sbjct: 348 VFIHILPRLLVMRRPQYKFETNRY 371


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +2

Query: 272 FTLVRWHGKSFNAINR--GAFRCFGNAGIIICIPGTRIGGRADWRRINFRVRGRILRRYW 445
           F + +WH K+F A+ R  G           I   G  +    DW   N++    I+  Y 
Sbjct: 71  FDVDQWHNKTFLAVIRYDGVPSSLNVISEKIGNGGCLLQPYPDWSWANYKDCSGIVSAY- 129

Query: 446 TVLVVEFRRVRILRS 490
            + + +F R+ +L S
Sbjct: 130 KIAIDKFDRLWVLDS 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,499
Number of Sequences: 438
Number of extensions: 4234
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)