Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13h10f
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   3.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   3.9  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    26   5.1  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   5.1  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   5.1  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   5.1  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.8  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   6.8  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.8  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   6.8  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   9.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   9.0  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   9.0  

>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 407 NVESEKQLLSPPSTTVVTGTDYSYIDGRVLPATTYQNN-GQPYVITTQRLQQIRSNFM 577
           N+E+EKQ L+     +    + + ++  V    ++ N  G+PY+IT  +LQ+    F+
Sbjct: 9   NLENEKQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLITEFQLQRCMEKFL 66


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 467 DYSY--IDGRVLPATTYQNNGQPYVITTQRLQQIRSNFMYW 583
           D++Y  I GR  PA  +Q   QP++I  ++   +   + YW
Sbjct: 288 DFAYWSISGRCSPAFFFQLLIQPFLINLEKRIPLLRKYHYW 328


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 121 FNTHCSSFFHAFVVIVI 71
           F+ HC+SFF +FV++ +
Sbjct: 135 FDVHCNSFFPSFVLLYV 151


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 326 RSGKYQLNDGL-VGEEPVNLEAVDFNSNNVESEKQLLSPPSTTV 454
           +S K QL D + V  +   L+   FN  + E++K L  PPS  V
Sbjct: 173 QSPKGQLRDNISVPNQQDGLDPEVFNQQSKETKKSLQVPPSRNV 216


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 263 DETFEETSPVELLPDTENLEVRSGKYQLNDGLVGEE-PVNLEA 388
           D T E  SP++  PD +  EV+S +      +  +E PV+L+A
Sbjct: 316 DHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQETPVHLKA 358


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 185 VNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTEN 316
           V+  E   SVT   VVE ++ V+E E + + E    EL+P + N
Sbjct: 103 VSPFELAASVTSQDVVEADSLVEENELQAWLEKQ--ELVPSSSN 144


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 413 ESEKQLLSPPSTTVVTGTDYSYIDGRVLPATTYQNNGQPYVI 538
           E  + LL+   T   T  ++ YI   VL +  YQ N  PY++
Sbjct: 136 EENETLLNTNLTLSSTNREFYYIS-EVLESLHYQGNKDPYLL 176


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +2

Query: 173 QDEIVNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTENL 319
           +DEI ++  S +S    Q+ +L+  VKE++ +  +++  ++ L D   L
Sbjct: 92  RDEIEHEVSSAISSCIHQIAKLQEIVKEQQSQIPKKSGWLQGLRDPSKL 140


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 206 VSVTEAQVVELETDVKEKEDETFEETSPVELLPDTE 313
           + V E + +E  T VKE E     E     L PD+E
Sbjct: 154 IDVEEKETIEPTTPVKEVETTAHAEEEKGPLTPDSE 189


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 191 DTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTENLEVRSGKY 340
           D E      + Q+ E+E   KE ++E   E +   +LP      +R G +
Sbjct: 283 DQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPILPPKNQEPIRMGGF 332


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +2

Query: 185  VNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPD--TENLEVRSGKYQLND-G 355
            + DT       E  V  +E        E  ++++PVELL D  ++N +    + ++    
Sbjct: 956  IADTRRNQDAPEKHVPVIEIQSSRPSLEKTDQSTPVELLIDSHSQNSQNEEKRSRMKFWA 1015

Query: 356  LVGEEPVNLEAVDFNSNNVESEKQLLSPPSTT 451
                +  N E +   +  V     +LSP STT
Sbjct: 1016 FPHHKAENYEQISDTNIPVIETNVMLSPSSTT 1047


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +2

Query: 245 DVKEKEDETFEETSPVELLPDTENLEVRSGKYQLNDGLVGEEPVNLEAVDFNSNNVESEK 424
           D+K ++DE  EE  PV+  P  ++ + ++  +   +    E+ V  E  + +   V   K
Sbjct: 58  DLKPEDDEVDEEVVPVKKKPSKKSKKAKANAF---EAFADEQSVEEEEEEDSEKPVRKNK 114

Query: 425 Q 427
           +
Sbjct: 115 K 115


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 135 KTNLILTPIVPVSFTLLWSSLFGRLIGFFIRSQQRQVP 22
           K NL+LTP V   F +L ++LF  ++ F+ +S    VP
Sbjct: 397 KRNLLLTPFVVPGF-MLAAALFFNMV-FWSKSSSSTVP 432


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 VNDTESTVSVTEAQVVELETDVKEKEDETFEE 280
           VN   S+ S +E Q+ +    VK+KE+E + E
Sbjct: 148 VNYNSSSESESEEQISKATKKVKQKEEEEYVE 179


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 227 VVELETDVKEKEDETFEETSPVELLPD 307
           V ELE DVKE+ DE + +   + ++P+
Sbjct: 526 VQELEQDVKEECDEKYGKVVHIAVVPN 552


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 73  IWSAYRFFYSLSTTTGASLLYR 8
           +W+ +    S ST++G SL+Y+
Sbjct: 323 LWNGFHVIVSTSTSSGKSLIYQ 344


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 366 KSQLTLKLSISTRTMLKAKSNSSRHQVLRSSPELTILTS 482
           +S  TL  S   +T +     SSR Q L S P L  LTS
Sbjct: 182 RSHQTLPSSNVNKTGVLLLPRSSRQQTLASRPSLPDLTS 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,560
Number of Sequences: 5004
Number of extensions: 49652
Number of successful extensions: 191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)