Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13h10f
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 33 0.14
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 31 0.57
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829... 29 2.3
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072... 29 3.0
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.0
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 29 3.0
01_06_1698 - 39264075-39264468,39264545-39264696,39264780-392648... 29 4.0
11_04_0097 + 13448740-13450725 28 7.0
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 7.0
03_01_0031 + 292335-292844 28 7.0
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 27 9.2
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 27 9.2
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 24 9.8
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 251 KEKEDETFEETSPVELLPDTENLEVRSGKYQLNDGLVGEEPVNLEAVDFNSN 406
K++ D + ++ SP E P+ N E SGKY+ +D L P L V +N N
Sbjct: 728 KDEYDGSLQDASPSEP-PNDSNCE--SGKYENSDSLQDASPAELSEVCYNGN 776
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 233 ELETDVKEKEDETFEETSPVELLPDTENLEVRSGKYQLNDGLVGE-EPVNLEAVDFNSN 406
E + +ET +E+ P E+ D++ +EV + + DGL E V+ E DF+ +
Sbjct: 455 EFAAEEYASSEETDDESDPSEVATDSDEVEVEKLQVAMEDGLTAEANQVDDEEDDFSGD 513
>03_06_0331 -
33181757-33181795,33182325-33182453,33182941-33182967,
33183459-33183545,33183827-33183975,33185467-33185521,
33185596-33187584,33188705-33188782
Length = 850
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 290 VELLPDTENLEVRSGKYQLNDGLV--GEEPVNLEAVDFNSNNVESEKQLLSPPSTTVVTG 463
VE + +TE+ E+ ND ++ GE P+ A DF N+ E L+S P+T+ +
Sbjct: 453 VECVLNTEDPEI-----PCNDDVIFPGESPLQCSATDFGQNS-EHNTCLVS-PATSPASN 505
Query: 464 TDYSYIDGRVLPATTYQNNGQP 529
++S + + L N +P
Sbjct: 506 VEHSNVSDKALIKREDMTNTEP 527
>07_03_0312 +
16606724-16606796,16606885-16607015,16607105-16607274,
16607365-16607511,16608248-16608299,16608725-16608899,
16609523-16609605,16610528-16610740,16611850-16611981,
16612517-16612652,16613218-16613273,16613868-16613910,
16613990-16614435
Length = 618
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -2
Query: 541 GDDVWLSIVLVGRRWEYTAIDVRIVS-SGDDRSTWWREELLFAFNIVRVEIDSFKVNWLF 365
G+ V ++I R EY + V+ SG+D +WW E + FA +I + + +
Sbjct: 500 GEVVEINIEGRNRNDEYLCNGTKSVTESGEDDPSWWEEAVKFADSIENTDHGPDTRDQVG 559
Query: 364 SN*AIVELVLPAS 326
S + L+LPAS
Sbjct: 560 SLFCCLLLLLPAS 572
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +2
Query: 176 DEIVNDTESTVSVTEAQVVELE----TDVKEKEDETFEETSPVELLPDTENLEVRSGKYQ 343
+E + +TE TV + AQ ELE T+ E+E E P E + D E +E + +
Sbjct: 1412 EEHILETEVTVDKSSAQEPELEEIKNTEPAEQEHNITETGLPEEEMKDNEAMETETVPHD 1471
Query: 344 LN 349
N
Sbjct: 1472 SN 1473
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +2
Query: 185 VNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTENLEVRSGKYQLNDG 355
+ + ES +S E V ELE+ ++++ + ++ + + L+ + ++E R K DG
Sbjct: 479 IQNMESDLSRMEKVVTELESTIRDQRELISQQHTELNLMNEKLSIESRKAKSLERDG 535
>01_06_1698 -
39264075-39264468,39264545-39264696,39264780-39264830,
39264946-39265122,39265256-39265348,39265489-39265555,
39265695-39265768,39266007-39266088,39266182-39266255,
39266354-39266383,39266475-39266534,39267524-39268225
Length = 651
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 218 EAQVVELETDVKEK-EDETFEETSPVELLPDTENLEVRSGKYQLNDGLVGEEPVNLEAVD 394
E +++ E + +K +D T+E T ++ + ++ G ++ D L+ +E VN++ +
Sbjct: 402 EQMILDHEEENPDKFKDTTYESTVDSSIVHEENRVQHTEGYFK--DTLLKKEVVNIDIKE 459
Query: 395 FNSNNVESEKQLL 433
+ + +E+QL+
Sbjct: 460 LDLDAARAERQLI 472
>11_04_0097 + 13448740-13450725
Length = 661
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 188 NDTESTVSVTEAQVVELETDVKE--KEDETFEETSPVELLP 304
ND +STV+V EAQVVE +D + +E+E ++ + LP
Sbjct: 622 ND-DSTVNVEEAQVVESHSDTNDITEENEGDDQKKSGDALP 661
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 505 RRWEYTAIDVRIVSSGDDRS 446
R EY + DV ++SSGDDRS
Sbjct: 2583 RTTEYRSSDVTLLSSGDDRS 2602
>03_01_0031 + 292335-292844
Length = 169
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 502 RWEYTAIDVRIVSSGDDRSTW-WREE 428
RW T++ SG DR+ W WREE
Sbjct: 139 RWPTTSVAGVAAGSGGDRARWPWREE 164
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = -2
Query: 607 IAASLIVEPVHKIGADLLQALGGDDVWLSIVL---VGRRWEYTAIDVRIVSSGDDRSTWW 437
+ + ++P+ + +L L DD I+ VG++ D S G D S W
Sbjct: 1059 VTPPVAIDPIRALACRVLLGLARDDAIAHILTKLQVGKKLSELIRDTSGQSIGGDNSRWQ 1118
Query: 436 REELLFAFNIVRVEIDSFK 380
E A ++ V +S K
Sbjct: 1119 NELTQVAIELIAVLTNSGK 1137
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 179 EIVNDTESTVSVTEAQVVELETDVKEK-----EDETFEETSPVELLPDTE 313
E+ + V +TEA +VE T ++K E+E EE P E++P +E
Sbjct: 221 ELYAPDNNEVEMTEAPLVENATATEKKEEHVDEEEEEEEEDPEEMVPASE 270
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 24.2 bits (50), Expect(2) = 9.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 481 RWPCTPSDDLPEQWTAIRHHHPAP 552
R PCTP D P A+R H P P
Sbjct: 61 RPPCTPESDPPV--LALRAHTPDP 82
Score = 21.4 bits (43), Expect(2) = 9.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 535 HHHPAPAADPLQFYVLVLRSR 597
HHHP P +F +L SR
Sbjct: 105 HHHPKLQLQPRRFTRSLLSSR 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,664
Number of Sequences: 37544
Number of extensions: 330163
Number of successful extensions: 1042
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -