Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13h09f
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   1.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   4.1  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 591 VVEFSIIRHPICKIYNKS*H 532
           V+E S + HP CKI  K  H
Sbjct: 394 VMELSDLHHPNCKINRKVHH 413


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 246 FAYSKTDFHNDLKVLSTMPKLAS 178
           FA  KTD+ +  K+L+T P L S
Sbjct: 339 FARKKTDYSSFGKILATEPTLFS 361


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 330 CLATNTSQITLKEDYVAEINKEQTLDNVCSEAKN 431
           CL  N  ++ L      + N+E T D +C  +KN
Sbjct: 595 CLDPNLPKLALFATKDIKQNEEITFDYMCQSSKN 628


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 339 TNTSQITLKEDYVAEINKEQTLDNVCSEAKNWVLSKFTDYKL 464
           T T Q+ LK   + E+N    L N       WV  ++ DYKL
Sbjct: 58  TLTVQLGLKLSQLIEMN----LKNQVMTTNVWVEQRWNDYKL 95


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 271 RKTRGKNLNVCCFMIWPTACA 333
           +K R KNLN    MIW   C+
Sbjct: 8   KKRRKKNLNQNQMMIWALDCS 28


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 LSDRCENQFLNKQIKSAIDQCPQDPRKEFKCL 302
           L+D   +  L   I+  I QC  + + E KCL
Sbjct: 81  LNDTDMDMDLKDSIRKIIRQCVDNAKNEDKCL 112


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 384 INKEQTLDNVCSEAKNWVLSKFTDYK 461
           INK + +++VC+E     L K  D K
Sbjct: 23  INKLRKIESVCAEENGIDLKKADDVK 48


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
          protein.
          Length = 90

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 46 LFKIACTSIFVK 11
          LFK+ACT  F++
Sbjct: 44 LFKLACTDTFME 55


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/51 (19%), Positives = 23/51 (45%)
 Frame = +3

Query: 261 DQCPQDPRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNV 413
           D  P+D  K ++C   + +     L+    ++ + E   +   K  ++DN+
Sbjct: 169 DVGPEDGYKTYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKFPSMDNI 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,523
Number of Sequences: 438
Number of extensions: 3046
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)