Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g19f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    28   1.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.3  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  

>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +1

Query: 286 FKLVDILEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQYGLCPNIEPMRCIKLQNAKK 462
           F+    +EG + D  +K PP      ++ +++WH     Y   P++E       +  KK
Sbjct: 210 FRARGFVEGELADPDDKLPPPGMPYNRNQYVAWHGASAVYHPQPSLEAQLPAAARKRKK 268


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 540  YWGSFNHPSNLSFIYYCRDMKTYKTNFFCILKFYT 436
            +W S     N S +Y+ R +  Y ++ F   +FYT
Sbjct: 1002 FWTSLGFAINNSLLYFVRALLFYCSSIFISKEFYT 1036


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 145 QWNSILQYLP*FPVN*LALDIIQLVDSTSYL 53
           +WNS L++L   P   L +DI+++V+  +YL
Sbjct: 173 EWNSHLRHLLNIPKCFLGVDIVEIVNFFNYL 203


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 531 SFNHPSNLSFIYYCRDMKTYKTNFFCILKF 442
           +F   S   F+YYC+    + +  F I+KF
Sbjct: 67  TFFKKSIFFFVYYCKQALEFISTVFSIIKF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,034
Number of Sequences: 5004
Number of extensions: 60442
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)