Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g19f
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   1.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.6  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 368 IFGYRGTVENFNMVCVLTL 424
           IFGY+GT  N  +V V T+
Sbjct: 282 IFGYQGTYVNLVIVKVFTI 300


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 14  TLVSDSVLSLKSPQVRRAIYQLDN 85
           TL++D+ +S+K P   R    LDN
Sbjct: 160 TLLADNSVSIKDPWFPRHASDLDN 183


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 352 FIEFKDFWISWHSG 393
           F+   D WISW  G
Sbjct: 381 FLTRGDLWISWEEG 394


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 5   YFKTLVSDSVLSLKSPQVRRAIYQLDNI*CQLINWKSW 118
           YF T ++  + +L S + R A  Q      ++I  +SW
Sbjct: 318 YFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSW 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,508
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)