Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g15f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.40 
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    27   2.1  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   8.7  

>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 337 SGNYSLKRMRYAKTGIETFRYIKKVLTCHVATST*TRAIT 218
           S + + K++   KT +ETF+ IKK L C + T    R  T
Sbjct: 58  SNSENKKQIPDTKTLLETFQKIKKTLECPICTEALQRPFT 97


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 148 VAFCALRFVSVLVEVLCF 201
           + FC++ FV++++ +LCF
Sbjct: 468 IGFCSVSFVALMIPILCF 485


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = -2

Query: 338 QWKLFIKTNAIRENRYRNF*IYKKGFNMSCGDKHVNSRNYRIEIYSKHNTSTSTDTNLRA 159
           QW+ F+K+N I ++ Y +        N    D   +++N   +I+   +T    + +L+ 
Sbjct: 220 QWEDFLKSNNISDDPYTS------SVNSFANDNLAHNKNIDPQIFQHSDTDNVVENSLQT 273

Query: 158 QN 153
           ++
Sbjct: 274 ED 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,830
Number of Sequences: 5004
Number of extensions: 52821
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)