Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g15f
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    27   0.19 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
 Frame = -3

Query: 256 CHVATST*TRAITELRYIQNTTLQRA---------QTRILGHKTQHTIFHI 131
           CH+   +    + ++RY  N  LQ           Q R+LGH+ +H+  H+
Sbjct: 152 CHIEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTIHL 202


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 388 VRNDDTDDYASMLQCQVSGNY 326
           +RND  D Y S L+C     Y
Sbjct: 136 LRNDRIDSYKSNLKCDKCSTY 156


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 476 NLVVFATKKKKNAPLRVLVRKWQRI 402
           +L+  A KKK +APL+ L  + QR+
Sbjct: 162 HLLQTADKKKASAPLQQLALQQQRL 186


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 95  ARCWFLVCRNINDV 136
           AR W + CRNI  V
Sbjct: 116 ARFWLMDCRNIGAV 129


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +2

Query: 92  YARCWFLVCRNINDVEYCV 148
           Y  CW+ +C  I     CV
Sbjct: 486 YPCCWWKICWTITTPAICV 504


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +2

Query: 92  YARCWFLVCRNINDVEYCV 148
           Y  CW+ +C  I     CV
Sbjct: 539 YPCCWWKICWTITTPAICV 557


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 563  SETTRQRYYLTTDIVTL 513
            +ET R+RYY T   V L
Sbjct: 1658 AETQRERYYATIHKVAL 1674


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 563  SETTRQRYYLTTDIVTL 513
            +ET R+RYY T   V L
Sbjct: 1654 AETQRERYYATIHKVAL 1670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,588
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)