Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g13f
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          27   0.11 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.11 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.60 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 211 YFLSELNLTFWFRYFWQYTAERLNYFQK--FYSHF-DLLRFNYP 89
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 211 YFLSELNLTFWFRYFWQYTAERLNYFQK--FYSHF-DLLRFNYP 89
           Y+L   N T W+        +RLNYF +    +HF  +L  NYP
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYFMLNHNYP 240


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 541 NWCRSVPPHYHTTGLWPVLL 600
           ++ R+VPP+ H T +W  LL
Sbjct: 143 SFLRTVPPYSHQTDVWVELL 162


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 205 LSELNLTFWFRYFW 164
           L +  L F+FR FW
Sbjct: 54  LMDFTLDFYFRQFW 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,155
Number of Sequences: 438
Number of extensions: 4134
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)