Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g11r
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.8  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 332 HFKMKNNVQLYQCAN 376
           H K  +NV  Y+CAN
Sbjct: 35  HLKSHSNVYQYRCAN 49


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 624 ARSRAPPASRGCAWP 580
           ARS   P S G AWP
Sbjct: 907 ARSNVTPRSPGRAWP 921


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 150 NLKVEYVNLQGLKKKTSCFFNMNSK 224
           N   + VNL   KK  + FFNM  K
Sbjct: 441 NENYKTVNLAAEKKDKNSFFNMFKK 465


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 54  TTVRARVVHLLN*RTVKPLKQREIYKY 134
           T+    + H+L   T+  L Q E YKY
Sbjct: 300 TSFNGMLSHILQKTTLNMLTQVECYKY 326


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 150 NLKVEYVNLQGLKKKTSCFFNMNSK 224
           N   + VNL   KK  + FFNM  K
Sbjct: 441 NENYKTVNLAAEKKDKNSFFNMFKK 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,427
Number of Sequences: 438
Number of extensions: 2306
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)