Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g11f
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    28   1.3  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   8.8  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   8.8  

>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 513 VTFTLLNFPMYTVGPPAFTAFGTGIVERGVFF 418
           +   LLNF +Y +  P+  +F T ++ + VFF
Sbjct: 173 IVLALLNFDIYVISLPSVESFLTPLIFQHVFF 204


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -3

Query: 231 SIYKVCPNNKLNNMFSVIV*ISLIDTVY---KILCIT-RMKLIKCTTYLHWLIKIHAL*V 64
           + Y++CP  +L   +S     ++ID +Y   ++L I+  MK ++  T L+  + +H    
Sbjct: 385 NFYEICPPERLTRFYSRASRETIIDHLYDSLRLLAISVTMKYVRNQTILY--VNLHDKRK 442

Query: 63  CI 58
           C+
Sbjct: 443 CL 444


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 350 DLEMVEERMHSFQSQK*IRYQQRPGYRSSGTPSRSYNHLYPSI 222
           +LE + ER++  + Q   R     GY ++ +P RS N  YPS+
Sbjct: 129 ELENLRERLNQVELQLSERPSSYLGYHNNLSPYRSPNS-YPSL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,226
Number of Sequences: 5004
Number of extensions: 42409
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)