Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g11f
         (620 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE006463-8|AAK61228.1|  156|Homo sapiens 60S ribosomal protein L...    31   2.5  
BC105600-1|AAI05601.1|  121|Homo sapiens MGC70863 protein protein.     30   7.6  
AJ272204-1|CAC01125.1|  999|Homo sapiens hypothetical protein pr...    30   7.6  

>AE006463-8|AAK61228.1|  156|Homo sapiens 60S ribosomal protein L23A
           like protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 320 SFQSQK*IRYQQRPGYRSSGTPSRSYNHLYPSIKFVLTT 204
           +FQ  K +R ++RP Y    TP R+    Y  IKF LTT
Sbjct: 45  TFQRPKTLRRRRRPEYPWKSTPRRNKLGHYAVIKFPLTT 83


>BC105600-1|AAI05601.1|  121|Homo sapiens MGC70863 protein protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 320 SFQSQK*IRYQQRPGYRSSGTPSRSYNHLYPSIKFVLTT 204
           +F+  K +R +++P Y    TP R+    Y  IKF LTT
Sbjct: 4   TFRRPKTLRLRRQPRYPQKSTPRRNKLGHYAIIKFPLTT 42


>AJ272204-1|CAC01125.1|  999|Homo sapiens hypothetical protein
           protein.
          Length = 999

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 371 LSASEPVDLEMVEERMHSFQSQK*IRYQQRPGYRSSG 261
           L A+EPV LE    RMH   SQ+ + Y     YR  G
Sbjct: 71  LDANEPVSLEARLSRMHFHDSQRKVDYVLAYHYRKRG 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,172,728
Number of Sequences: 237096
Number of extensions: 1503855
Number of successful extensions: 2367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)