Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13g06f
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   126   3e-30
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   126   3e-30
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.23 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    30   0.23 
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  126 bits (304), Expect = 3e-30
 Identities = 56/76 (73%), Positives = 66/76 (86%)
 Frame = +2

Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
           GKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 569 PNSAIRKCVRVQLIKN 616
           PNSAIRKCVRVQLIKN
Sbjct: 62  PNSAIRKCVRVQLIKN 77


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  126 bits (304), Expect = 3e-30
 Identities = 56/76 (73%), Positives = 66/76 (86%)
 Frame = +2

Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
           GKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 569 PNSAIRKCVRVQLIKN 616
           PNSAIRKCVRVQLIKN
Sbjct: 62  PNSAIRKCVRVQLIKN 77


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 512 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 71  WCLIFLFYFIYGDKE--VCSLSKVMKCFKCINFM*KRKYVVHAYQSQP 208
           +C +F  YF Y       CS  ++ K F+ +N +   +YV+H +   P
Sbjct: 151 FCYLFSSYFSYKSSRQYTCSSEEISKVFRHLNRLGGSEYVLHLFAQIP 198


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 449 WADKEFKKAHMGTKWKANPFGGASHAKGIV 538
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 455 PPIAVHDGGSRAYAP 411
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,561
Number of Sequences: 5004
Number of extensions: 58843
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)