Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13g06f
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 120 7e-28
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 120 7e-28
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 111 6e-25
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 32 0.32
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 32 0.32
10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777 28 5.2
04_01_0440 + 5746474-5746662,5746895-5747251 28 5.2
01_06_0931 - 33139383-33139580,33139748-33139870,33142520-331428... 27 9.0
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 120 bits (290), Expect = 7e-28
Identities = 53/76 (69%), Positives = 62/76 (81%)
Frame = +2
Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
GK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 569 PNSAIRKCVRVQLIKN 616
PNSAIRKC RVQL+KN
Sbjct: 61 PNSAIRKCARVQLVKN 76
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 120 bits (290), Expect = 7e-28
Identities = 53/76 (69%), Positives = 62/76 (81%)
Frame = +2
Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
GK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 569 PNSAIRKCVRVQLIKN 616
PNSAIRKC RVQL+KN
Sbjct: 61 PNSAIRKCARVQLVKN 76
Score = 120 bits (290), Expect = 7e-28
Identities = 53/76 (69%), Positives = 62/76 (81%)
Frame = +2
Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
GK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 172 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 230
Query: 569 PNSAIRKCVRVQLIKN 616
PNSAIRKC RVQL+KN
Sbjct: 231 PNSAIRKCARVQLVKN 246
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 111 bits (266), Expect = 6e-25
Identities = 50/75 (66%), Positives = 58/75 (77%)
Frame = +2
Query: 392 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 571
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 572 NSAIRKCVRVQLIKN 616
NSAI KC RVQL+KN
Sbjct: 133 NSAICKCARVQLVKN 147
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 141 SALNVLILCKNANMLCTHTRVSHGVDMIISWCKMNLFPSYYGRVIYEVHQKLLRCY 308
+ +++L K NM TR + + ++ W K + P+Y +V +QKLL+CY
Sbjct: 414 AGISLLFAPKPFNMRSGRTRRAEDIPLVSEWYKEHCPPAYPVKVRVS-YQKLLKCY 468
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 141 SALNVLILCKNANMLCTHTRVSHGVDMIISWCKMNLFPSYYGRVIYEVHQKLLRCY 308
+ +++L K NM TR + + ++ W K + P+Y +V +QKLL+CY
Sbjct: 414 AGISLLFAPKPFNMRSGRTRRAEDIPLVSEWYKEHCPPAYPVKVRVS-YQKLLKCY 468
>10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777
Length = 323
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 275 YDAAVIRWKQIHFTPRDYHVYAMADSGMRAQH 180
Y + RW + FTP + V+A D G+ H
Sbjct: 115 YTSETGRWSNLIFTPAPFLVFAFVDPGILVGH 146
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 445 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 543
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>01_06_0931 -
33139383-33139580,33139748-33139870,33142520-33142891,
33143380-33143450,33143769-33143810,33143895-33143967,
33144518-33144679,33144778-33144878,33144992-33145114,
33145296-33145689
Length = 552
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 431 GSRAYAPFVFLGVYLKLRCRRLSITNVYKTPK 336
GS +P+V YLK+RC RLS + + PK
Sbjct: 475 GSHVKSPYV---TYLKVRCLRLSPGQLVENPK 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,014
Number of Sequences: 37544
Number of extensions: 388729
Number of successful extensions: 799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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