Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13g06f
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 137 3e-32
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 137 3e-32
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 137 3e-32
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 35 0.20
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 35 0.20
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.20
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.20
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.20
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 35 0.20
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 7.5
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 137 bits (331), Expect = 3e-32
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = +2
Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 569 PNSAIRKCVRVQLIKN 616
PNSAIRKCVRVQLIKN
Sbjct: 62 PNSAIRKCVRVQLIKN 77
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 137 bits (331), Expect = 3e-32
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = +2
Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 569 PNSAIRKCVRVQLIKN 616
PNSAIRKCVRVQLIKN
Sbjct: 62 PNSAIRKCVRVQLIKN 77
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 137 bits (331), Expect = 3e-32
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = +2
Query: 389 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 568
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 569 PNSAIRKCVRVQLIKN 616
PNSAIRKCVRVQLIKN
Sbjct: 62 PNSAIRKCVRVQLIKN 77
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.20
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 494 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.20
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 494 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.20
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 494 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.20
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 494 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.20
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 494 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.20
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 494 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 607
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 7.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 472 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 600
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,625,439
Number of Sequences: 237096
Number of extensions: 2116041
Number of successful extensions: 4003
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4003
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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